GWAS1524477_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1524477_H (phosphatidylethanolamine measurement QTL GWAS1524477 (human)) Homo sapiens

Symbol: GWAS1524477_H
Name: phosphatidylethanolamine measurement QTL GWAS1524477 (human)
RGD ID: 597428403
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 5.0E-59
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,396,988 - 58,396,989RGD_MAPPER_PIPELINEGRCh38
GRCh371558,689,187 - 58,689,188RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1524477_HHumanphosphatidylethanolamine measurement  IAGPrs11855284405850206 GWAS_CATALOGPMID:34503513

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs11855284)
Human AssemblyChrPosition (strand)Source
GRCh381558,396,988 - 58,396,989RGD_MAPPER_PIPELINE


1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407177285GWAS826261_Hpolyunsaturated fatty acid measurement QTL GWAS826261 (human)4e-08polyunsaturated fatty acid measurement155839698858396989Human
597416923GWAS1512997_Hphosphatidylcholine measurement QTL GWAS1512997 (human)3e-59phosphatidylcholine measurement155839698858396989Human
597452437GWAS1548511_Hpolyunsaturated fatty acid measurement QTL GWAS1548511 (human)4e-08milk polyunsaturated fatty acid amount (VT:0010374)milk polyunsaturated fatty acid measurement (CMO:0000821)155839698858396989Human
597428629GWAS1524703_Hphosphatidylethanolamine measurement QTL GWAS1524703 (human)6e-11phosphatidylethanolamine measurement155839698858396989Human
597454422GWAS1550496_Htotal cholesterol measurement QTL GWAS1550496 (human)2e-84total cholesterol measurementblood total cholesterol level (CMO:0000051)155839698858396989Human
597428374GWAS1524448_Hphosphatidylcholine measurement QTL GWAS1524448 (human)2e-23phosphatidylcholine measurement155839698858396989Human
597424273GWAS1520347_Hapolipoprotein A 1 measurement QTL GWAS1520347 (human)2e-349apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)155839698858396989Human
597427473GWAS1523547_Hphosphatidylcholine measurement QTL GWAS1523547 (human)4e-52phosphatidylcholine measurement155839698858396989Human
597424138GWAS1520212_Htriglyceride measurement QTL GWAS1520212 (human)2e-29triglyceride measurementblood triglyceride level (CMO:0000118)155839698858396989Human
597463054GWAS1559128_Hvitamin D measurement QTL GWAS1559128 (human)7e-23vitamin D measurement155839698858396989Human

1 to 10 of 25 rows


1 to 20 of 26 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1524477_H GCST90060310 Phosphatidylethanolamine_38:6_[M-H]1- levels 13,814 British ancestry individuals C NR 5E-59 58.302 rs11855284 0.232499 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1512997_H GCST90060312 Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels 13,814 British ancestry individuals C NR 3E-59 58.523 rs11855284 0.24404 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1514312_H GCST90060273 Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels 13,814 British ancestry individuals C NR 3E-61 60.523 rs11855284 0.241256 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1514954_H GCST90060316 Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels 13,814 British ancestry individuals C NR 4E-57 56.398 rs11855284 0.226873 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1518078_H GCST90019494 Serum alkaline phosphatase levels 342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals C NR 6E-31 30.222 rs11855284 0.0346 alkaline phosphatase measurement (EFO:0004533)
 PMID:33462484
GWAS1520212_H GCST90019523 Triglyceride levels 342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals C NR 2E-29 28.699 rs11855284 0.0337 triglyceride measurement (EFO:0004530)
 PMID:33462484
GWAS1520347_H GCST90019495 Apolipoprotein A1 levels 311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals C NR 2E-349 348.699 rs11855284 0.1252 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:33462484
GWAS1520570_H GCST90019512 Low density lipoprotein cholesterol levels 341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals C NR 5E-15 14.302 rs11855284 0.0235 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:33462484
GWAS1521419_H GCST90060272 Phosphatidylethanolamine_36:4_[M-H]1- levels 13,814 British ancestry individuals C NR 8E-50 49.097 rs11855284 0.210182 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060247 Phosphatidylethanolamine_34:2_[M-H]1- levels 13,814 British ancestry individuals C NR 2E-29 28.699 rs11855284 0.159776 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1521708_H GCST90060690 Phosphatidylethanolamine(36:4)_[M+H]1+ levels 5,662 Pakistani ancestry individuals A NR 2E-27 26.699 rs11855284 0.0833 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1522059_H GCST90060199 Diacylglycerol_38:6_[M+H-H2O]1+ levels 13,814 British ancestry individuals C NR 8E-15 14.097 rs11855284 0.0959186 diglyceride measurement (EFO:0010223)
 PMID:34503513
None Available GCST90060738 Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals T NR 2E-27 26.699 rs11855284 0.1389 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1522092_H GCST90060274 Phosphatidylethanolamine_36:3_[M-H]1- levels 13,814 British ancestry individuals C NR 1E-14 14 rs11855284 0.0985092 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060689 Phosphatidylethanolamine(36:4)_[M-H]1- levels 5,662 Pakistani ancestry individuals C NR 2E-27 26.699 rs11855284 0.0877 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060665 Phosphatidylethanolamine(34:2)_[M+H]1+ levels 5,662 Pakistani ancestry individuals C NR 2E-27 26.699 rs11855284 0.0565 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1523547_H GCST90060249 Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels 13,814 British ancestry individuals C NR 4E-52 51.398 rs11855284 0.227331 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1524448_H GCST90060371 Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels 13,814 British ancestry individuals C NR 2E-23 22.699 rs11855284 0.178607 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060313 Phosphatidylethanolamine_38:5_[M-H]1- levels 13,814 British ancestry individuals C NR 2E-23 22.699 rs11855284 0.12283 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1524703_H GCST90060250 Phosphatidylethanolamine_34:1_[M-H]1- levels 13,814 British ancestry individuals C NR 6E-11 10.222 rs11855284 0.0829918 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
1 to 20 of 26 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90060310 GWAS Catalog

Note Type Note Reference