GWAS1521705_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1521705_H (phosphatidylethanolamine measurement QTL GWAS1521705 (human)) Homo sapiens

Symbol: GWAS1521705_H
Name: phosphatidylethanolamine measurement QTL GWAS1521705 (human)
RGD ID: 597425631
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 5.0E-30
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,252,865 - 58,252,866RGD_MAPPER_PIPELINEGRCh38
GRCh371558,545,064 - 58,545,065RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1521705_HHumanphosphatidylethanolamine measurement  IAGPrs1123294405850206 GWAS_CATALOGPMID:34503513

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs1123294)
Human AssemblyChrPosition (strand)Source
GRCh381558,252,865 - 58,252,866RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597425631GWAS1521705_Hphosphatidylethanolamine measurement QTL GWAS1521705 (human)5e-30phosphatidylethanolamine measurement155825286558252866Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1521705_H GCST90060689 Phosphatidylethanolamine(36:4)_[M-H]1- levels 5,662 Pakistani ancestry individuals C NR 5E-30 29.302 rs1123294 0.1498 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060690 Phosphatidylethanolamine(36:4)_[M+H]1+ levels 5,662 Pakistani ancestry individuals A NR 5E-30 29.302 rs1123294 0.093 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
Database
Acc Id
Source(s)
GWAS Catalog GCST90060689 GWAS Catalog
  GCST90060690 GWAS Catalog

Note Type Note Reference