GWAS1517829_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1517829_H (apolipoprotein A 1 measurement QTL GWAS1517829 (human)) Homo sapiens

Symbol: GWAS1517829_H
Name: apolipoprotein A 1 measurement QTL GWAS1517829 (human)
RGD ID: 597421755
Trait: apolipoprotein A 1 measurement
Measurement Type: blood apolipoprotein AI level   (CMO:0000520)    
LOD Score: Not Available
P Value: 5.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,422,588 - 58,422,589RGD_MAPPER_PIPELINEGRCh38
GRCh371558,714,787 - 58,714,788RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1517829_HHumanblood apolipoprotein AI level  IAGPrs11631178405850206 GWAS_CATALOGPMID:33462484

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1517829_HHumanapolipoprotein A 1 measurement  IAGPrs11631178405850206 GWAS_CATALOGPMID:33462484

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs11631178)
Human AssemblyChrPosition (strand)Source
GRCh381558,422,588 - 58,422,589RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597421755GWAS1517829_Hapolipoprotein A 1 measurement QTL GWAS1517829 (human)5e-15apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)155842258858422589Human
597389866GWAS1485940_Hhigh density lipoprotein cholesterol measurement QTL GWAS1485940 (human)2e-11high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155842258858422589Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1517829_H GCST90019495 Apolipoprotein A1 levels 311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals C NR 5E-15 14.302 rs11631178 0.0321 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:33462484
GWAS1485940_H GCST010242 HDL cholesterol levels 403,943 European ancestry individuals T 0.896191 2E-11 10.699 rs11631178 0.0210646 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:32203549
Database
Acc Id
Source(s)
GWAS Catalog GCST90019495 GWAS Catalog

Note Type Note Reference