GWAS1514957_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1514957_H (phosphatidylcholine measurement QTL GWAS1514957 (human)) Homo sapiens

Symbol: GWAS1514957_H
Name: phosphatidylcholine measurement QTL GWAS1514957 (human)
RGD ID: 597418883
Trait: phosphatidylcholine measurement
LOD Score: Not Available
P Value: 6.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,414,712 - 58,414,713RGD_MAPPER_PIPELINEGRCh38
GRCh371558,706,911 - 58,706,912RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1514957_HHumanphosphatidylcholine measurement  IAGPrs62000869405850206 GWAS_CATALOGPMID:34503513

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs62000869)
Human AssemblyChrPosition (strand)Source
GRCh381558,414,712 - 58,414,713RGD_MAPPER_PIPELINE


1 to 10 of 12 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597418555GWAS1514629_Hphosphatidylcholine measurement QTL GWAS1514629 (human)2e-19phosphatidylcholine measurement155841471258414713Human
597428541GWAS1524615_Hphosphatidylethanolamine measurement QTL GWAS1524615 (human)1e-23phosphatidylethanolamine measurement155841471258414713Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597512360GWAS1608434_Hcomplex trait QTL GWAS1608434 (human)7e-12complex trait155841471258414713Human
597427705GWAS1523779_Hphosphatidylcholine measurement QTL GWAS1523779 (human)1e-16phosphatidylcholine measurement155841471258414713Human
597418883GWAS1514957_Hphosphatidylcholine measurement QTL GWAS1514957 (human)6e-16phosphatidylcholine measurement155841471258414713Human
597416928GWAS1513002_Hphosphatidylcholine measurement QTL GWAS1513002 (human)3e-22phosphatidylcholine measurement155841471258414713Human
597425399GWAS1521473_Hphosphatidylethanolamine measurement QTL GWAS1521473 (human)5e-11phosphatidylethanolamine measurement155841471258414713Human
597425735GWAS1521809_Hphosphatidylethanolamine measurement QTL GWAS1521809 (human)1e-10phosphatidylethanolamine measurement155841471258414713Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human

1 to 10 of 12 rows


1 to 10 of 10 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1514957_H GCST90060316 Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels 13,814 British ancestry individuals G NR 6E-16 15.222 rs62000869 0.0972607 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1513002_H GCST90060312 Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels 13,814 British ancestry individuals G NR 3E-22 21.523 rs62000869 0.123089 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1514629_H GCST90060273 Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels 13,814 British ancestry individuals G NR 2E-19 18.699 rs62000869 0.110947 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1521422_H GCST90060272 Phosphatidylethanolamine_36:4_[M-H]1- levels 13,814 British ancestry individuals G NR 2E-16 15.699 rs62000869 0.0981872 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1521473_H GCST90060313 Phosphatidylethanolamine_38:5_[M-H]1- levels 13,814 British ancestry individuals G NR 5E-11 10.302 rs62000869 0.0682952 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1521809_H GCST90060247 Phosphatidylethanolamine_34:2_[M-H]1- levels 13,814 British ancestry individuals G NR 1E-10 10 rs62000869 0.0768007 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1523779_H GCST90060249 Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels 13,814 British ancestry individuals G NR 1E-16 16 rs62000869 0.104722 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1524615_H GCST90060310 Phosphatidylethanolamine_38:6_[M-H]1- levels 13,814 British ancestry individuals G NR 1E-23 23 rs62000869 0.121134 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1608434_H GCST90270119 Multi-trait sum score 141,980 European ancestry males ? NR 7E-12 11.155 rs62000869 N/A complex trait (EFO:0010578)
 PMID:37277458
GWAS1628202_H GCST90270116 Multi-trait sex score 161,906 European ancestry females ? NR 2E-11 10.699 rs62000869 N/A sexual dimorphism measurement (EFO:0021796)
 PMID:37277458
1 to 10 of 10 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90060316 GWAS Catalog

Note Type Note Reference