GWAS1514165_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1514165_H (sex hormone-binding globulin measurement QTL GWAS1514165 (human)) Homo sapiens

Symbol: GWAS1514165_H
Name: sex hormone-binding globulin measurement QTL GWAS1514165 (human)
RGD ID: 597418091
Trait: sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 1E-91
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381553,436,513 - 53,436,514RGD_MAPPER_PIPELINEGRCh38
GRCh371553,728,710 - 53,728,711RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1514165_HHumansex hormone-binding globulin measurement  IAGPrs149624078405850206 GWAS_CATALOGPMID:32042192

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs149624078)
Human AssemblyChrPosition (strand)Source
GRCh381553,436,513 - 53,436,514RGD_MAPPER_PIPELINE


1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597507004GWAS1603078_HC-reactive protein measurement QTL GWAS1603078 (human)2e-38C-reactive protein measurementblood C-reactive protein level (CMO:0003160)155343651353436514Human
597458905GWAS1554979_HC-reactive protein measurement QTL GWAS1554979 (human)4e-43C-reactive protein measurementblood C-reactive protein level (CMO:0003160)155343651353436514Human
597459124GWAS1555198_HC-reactive protein measurement QTL GWAS1555198 (human)3e-35C-reactive protein measurementblood C-reactive protein level (CMO:0003160)155343651353436514Human
597491127GWAS1587201_Hsex hormone-binding globulin measurement QTL GWAS1587201 (human)1e-23sex hormone-binding globulin measurement155343651353436514Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597513395GWAS1609469_Hfree androgen index QTL GWAS1609469 (human)3e-25free androgen index155343651353436514Human
597418091GWAS1514165_Hsex hormone-binding globulin measurement QTL GWAS1514165 (human)1e-91sex hormone-binding globulin measurement155343651353436514Human
597478316GWAS1574390_Htestosterone measurement QTL GWAS1574390 (human)3e-12testosterone measurementserum testosterone level (CMO:0000568)155343651353436514Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597433161GWAS1529235_Hsex hormone-binding globulin measurement QTL GWAS1529235 (human)5e-81sex hormone-binding globulin measurement155343651353436514Human

1 to 10 of 13 rows


1 to 13 of 13 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1514165_H GCST90012108 Sex hormone-binding globulin levels adjusted for BMI 180,094 European ancestry men C 0.986262 1E-91 91 rs149624078 0.0960244 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1717410_H GCST90019493 Serum albumin levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals T NR 1E-9 9 rs149624078 0.0674 serum albumin amount (OBA:2050068)
 PMID:33462484
GWAS1529235_H GCST90012109 Sex hormone-binding globulin levels 180,726 European ancestry men C 0.986262 5E-81 80.302 rs149624078 0.0975763 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1554979_H GCST90029070 C-reactive protein levels 575,531 European ancestry individuals T NR 4E-43 42.398 rs149624078 0.14 C-reactive protein measurement (EFO:0004458)
 PMID:35459240
GWAS1555198_H GCST90018950 C-reactive protein 353,466 European ancestry individuals, 83,025 East Asian ancestry individuals T NR 3E-35 34.523 rs149624078 0.1301 C-reactive protein measurement (EFO:0004458)
 PMID:34594039
GWAS1574390_H GCST90012102 Bioavailable testosterone levels 188,507 European ancestry women T 0.014013999999999971 3E-12 11.523 rs149624078 0.0791193 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS1587201_H GCST90027091 Sex hormone-binding globulin levels 148,248 British ancestry men T 0.01 1E-23 23 rs149624078 3.45 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:34321204
GWAS1600590_H GCST90179148 Low-density lipoprotein levels (MTAG) 361,194 European ancestry individuals T NR 5E-9 8.302 rs149624078 0.03468 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36376304
GWAS1603078_H GCST90179146 C-reactive protein levels (MTAG) 575,531 European ancestry individuals T NR 2E-38 37.699 rs149624078 0.11471 C-reactive protein measurement (EFO:0004458)
 PMID:36376304
GWAS1609469_H GCST90239823 Free androgen index 162,068 British ancestry men ? NR 3E-25 24.523 rs149624078 0.154415 free androgen index (EFO:0007005)
 PMID:36653534
GWAS1610798_H GCST90239822 Sex hormone-binding globulin levels 188,443 British ancestry women ? NR 4E-36 35.398 rs149624078 0.166798 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:36653534
GWAS1613035_H GCST90239821 Sex hormone-binding globulin levels 163,363 British ancestry men ? NR 2E-73 72.699 rs149624078 0.254123 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:36653534
GWAS1810923_H GCST90018945 Serum albumin levels 315,268 European ancestry individuals, 120,539 East Asian ancestry individuals T NR 4E-10 9.398 rs149624078 0.0676 serum albumin amount (OBA:2050068)
 PMID:34594039
1 to 13 of 13 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90012108 GWAS Catalog

Note Type Note Reference