GWAS1509857_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1509857_H (Duchenne muscular dystrophy, disease progression measurement QTL GWAS1509857 (human)) Homo sapiens

Symbol: GWAS1509857_H
Name: Duchenne muscular dystrophy, disease progression measurement QTL GWAS1509857 (human)
RGD ID: 597413783
Trait: Duchenne muscular dystrophy, disease progression measurement
Measurement Type: disease progression measurement   (CMO:0001110)    
LOD Score: Not Available
P Value: 7.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381538,817,032 - 38,817,033RGD_MAPPER_PIPELINEGRCh38
GRCh371539,109,233 - 39,109,234RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1509857_HHumanDuchenne muscular dystrophy  IAGPrs2725797405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:30014611


Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1509857_HHumandisease progression measurement  IAGPrs2725797405850206 GWAS_CATALOGPMID:30014611

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1509857_HHumandisease progression measurement  IAGPrs2725797405850206 GWAS_CATALOGPMID:30014611

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs2725797)
Human AssemblyChrPosition (strand)Source
GRCh381538,817,032 - 38,817,033RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597410266GWAS1506340_HDuchenne muscular dystrophy, disease progression measurement QTL GWAS1506340 (human)0.0000008Duchenne muscular dystrophy, disease progression measurementdisease progression measurement (CMO:0001110)153881703238817033Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
597413783GWAS1509857_HDuchenne muscular dystrophy, disease progression measurement QTL GWAS1509857 (human)7e-09Duchenne muscular dystrophy, disease progression measurementdisease progression measurement (CMO:0001110)153881703238817033Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1509857_H GCST006286 Age at loss of ambulation in Duchenne muscular dystrophy 243 European ancestry cases, 10 cases ? NR 7E-9 8.155 rs2725797 N/A disease progression measurement (EFO:0008336)
 PMID:30014611
GWAS1506340_H GCST006286 Age at loss of ambulation in Duchenne muscular dystrophy 243 European ancestry cases, 10 cases ? NR 8E-7 6.097 rs2725797 N/A disease progression measurement (EFO:0008336)
 PMID:30014611
Database
Acc Id
Source(s)
GWAS Catalog GCST006286 GWAS Catalog

Note Type Note Reference