GWAS1506840_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1506840_H (heel bone mineral density QTL GWAS1506840 (human)) Homo sapiens

Symbol: GWAS1506840_H
Name: heel bone mineral density QTL GWAS1506840 (human)
RGD ID: 597410766
Trait: heel bone mineral density
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 9.0E-20
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,068,597 - 11,068,598RGD_MAPPER_PIPELINEGRCh38
GRCh37111,128,654 - 11,128,655RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1506840_HHumanbone mineral density  IAGPrs2791655405850206 GWAS_CATALOGPMID:30598549

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1506840_HHumanheel bone mineral density  IAGPrs2791655405850206 GWAS_CATALOGPMID:30598549

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1349336EXOSC10exosome component 1011106661811099869Human


Peak: (rs2791655)
Human AssemblyChrPosition (strand)Source
GRCh38111,068,597 - 11,068,598RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597410766GWAS1506840_Hheel bone mineral density QTL GWAS1506840 (human)9e-20heel bone mineral densitybone mineral density (CMO:0001226)11106859711068598Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1506840_H GCST006979 Heel bone mineral density 426,824 British ancestry individuals G 0.279671 9E-20 19.046 rs2791655 0.0186244 heel bone mineral density (EFO:0009270)
 PMID:30598549
GWAS1809293_H GCST90018945 Serum albumin levels 315,268 European ancestry individuals, 120,539 East Asian ancestry individuals A NR 1E-9 9 rs2791655 0.0147 serum albumin amount (OBA:2050068)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST006979 GWAS Catalog

Note Type Note Reference