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Symbol:

GWAS1506033_H

Name:

volumetric bone mineral density QTL GWAS1506033 (human)

RGD ID:

597409959

Trait:

volumetric bone mineral density

Measurement Type:

volumetric bone mineral density (CMO:0001553)

LOD Score:

Not Available

P Value:

6.0E-7

Variance:

Not Available

Position

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh38	15	38,817,913 - 38,817,914	RGD_MAPPER_PIPELINE	GRCh38
GRCh37	15	39,110,114 - 39,110,115	RGD_MAPPER_PIPELINE	GRCh37

Population Stats:

Not Available

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Clinical Measurement

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GWAS1506033_H	Human	volumetric bone mineral density		IAGP	rs2624257	405850206		GWAS_CATALOG	PMID:31790847

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GWAS1506033_H	Human	volumetric bone mineral density		IAGP	rs2624257	405850206		GWAS_CATALOG	PMID:31790847

#	Reference Title	Reference Citation
1.	RGD GWAS Catalog Import Pipeline	RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	38,817,913 - 38,817,914	RGD_MAPPER_PIPELINE

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2289410	BW327_H	Body weight QTL 327 (human)	3.32	0.0001	Body fat amount		15	19980129	45980129	Human
1643273	BW330_H	Body Weight QTL 330 (human)	1.05	0.014	Body weight	body mass index	15	26866719	52866719	Human
2289430	BMD7_H	Bone mineral density QTL 7 (human)	3.32	0.0001	Bone mineral density		15	19980129	45980129	Human
1559411	SCL107_H	Serum cholesterol level QTL 107 (human)	3.88		Lipid level	triglyceride	15	26543552	52543552	Human
2299958	PRSTS330_H	Prostate tumor susceptibility QTL 330 (human)	1.02	0.0151	Prostate tumor susceptibility		15	34790230	60790230	Human
1643523	BW284_H	Body Weight QTL 284 (human)	1.95	0.0013	Body weight		15	21792889	47792889	Human
597409959	GWAS1506033_H	volumetric bone mineral density QTL GWAS1506033 (human)		0.0000006	volumetric bone mineral density	volumetric bone mineral density (CMO:0001553)	15	38817913	38817914	Human
1559354	LDLPS4_H	Low density lipoprotein particle size QTL 4 (human)	2.2	0.019	LDL particle size		15	34790230	60790230	Human
2289420	BW314_H	Body weight QTL 314 (human)	2.72	0.0003	Body weight	lean mass	15	19980129	45980129	Human

Data has come from the GWAS Catalog		Download
The highlighted row represents the current QTL

QTL	GWAS Catalog Study	Disease Trait	Study Size	Risk Allele	Risk Allele Frequency	P Value	P Value MLOG	Peak Marker	Reported Odds Ratio or Beta-coefficient	Ontology Accession	PubMed
GWAS1506033_H	GCST009377	Bone mineral density	1,030 Hispanic or Latin American children	A	0.35	6E-7	6.222	rs2624257	0.27	volumetric bone mineral density (EFO:0007620)	PMID:31790847

Database	Acc Id	Source(s)
GWAS Catalog	GCST009377	GWAS Catalog

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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