GWAS1503408_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1503408_H (non-high density lipoprotein cholesterol measurement QTL GWAS1503408 (human)) Homo sapiens

Symbol: GWAS1503408_H
Name: non-high density lipoprotein cholesterol measurement QTL GWAS1503408 (human)
RGD ID: 597407334
Trait: non-high density lipoprotein cholesterol measurement
Measurement Type: blood non-high density lipoprotein cholesterol level   (CMO:0003967)    
serum non-high density lipoprotein cholesterol level   (CMO:0003841)    
LOD Score: Not Available
P Value: 3.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381553,447,229 - 53,447,230RGD_MAPPER_PIPELINEGRCh38
GRCh371553,739,426 - 53,739,427RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1503408_HHumannon-high density lipoprotein cholesterol measurement  IAGPrs79391862405850206 GWAS_CATALOGPMID:34887591

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38612523LOC105370826uncharacterized LOC105370826155344579553552999Human


Peak: (rs79391862)
Human AssemblyChrPosition (strand)Source
GRCh381553,447,229 - 53,447,230RGD_MAPPER_PIPELINE


1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597431066GWAS1527140_Hsex hormone-binding globulin measurement QTL GWAS1527140 (human)4e-99sex hormone-binding globulin measurement155344722953447230Human
597514708GWAS1610782_Htestosterone measurement QTL GWAS1610782 (human)2e-34testosterone measurementserum testosterone level (CMO:0000568)155344722953447230Human
597395025GWAS1491099_Hlow density lipoprotein cholesterol measurement QTL GWAS1491099 (human)3e-25low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155344722953447230Human
597477649GWAS1573723_HC-reactive protein measurement QTL GWAS1573723 (human)1e-16C-reactive protein measurementblood C-reactive protein level (CMO:0003160)155344722953447230Human
597508685GWAS1604759_Htotal cholesterol measurement QTL GWAS1604759 (human)5e-22total cholesterol measurementblood total cholesterol level (CMO:0000051)155344722953447230Human
597475023GWAS1571097_Hsex hormone-binding globulin measurement QTL GWAS1571097 (human)2e-46sex hormone-binding globulin measurement155344722953447230Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597409102GWAS1505176_Hnon-high density lipoprotein cholesterol measurement QTL GWAS1505176 (human)2e-18non-high density lipoprotein cholesterol measurementblood non-high density lipoprotein cholesterol level (CMO:0003967)155344722953447230Human
597442695GWAS1538769_Hsex hormone-binding globulin measurement QTL GWAS1538769 (human)9e-34sex hormone-binding globulin measurement155344722953447230Human
597433857GWAS1529931_Hsex hormone-binding globulin measurement QTL GWAS1529931 (human)2e-121sex hormone-binding globulin measurement155344722953447230Human

1 to 10 of 27 rows


1 to 20 of 27 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1503408_H GCST90239670 Non-HDL cholesterol levels 1,320,016 European ancestry individuals C 0.023114 3E-17 16.523 rs79391862 0.0582112 non-high density lipoprotein cholesterol measurement (EFO:0005689)
 PMID:34887591
GWAS1491099_H GCST90239658 Low density lipoprotein cholesterol levels 1,320,016 European ancestry individuals C 0.0201963 3E-25 24.523 rs79391862 0.0639367 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34887591
GWAS1494147_H GCST90239673 Total cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 2E-25 24.699 rs79391862 N/A total cholesterol measurement (EFO:0004574)
 PMID:34887591
GWAS1497094_H GCST90002412 Low density lipoprotein cholesterol levels 431,167 European ancestry individuals A 0.986175 9E-11 10.046 rs79391862 0.0542363 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:32493714
GWAS1505176_H GCST90239667 Non-HDL cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 2E-18 17.699 rs79391862 N/A non-high density lipoprotein cholesterol measurement (EFO:0005689)
 PMID:34887591
GWAS1527140_H GCST90012111 Sex hormone-binding globulin levels 370,125 European ancestry individuals A 0.98604 4E-99 98.398 rs79391862 0.083002 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1527858_H GCST90012113 Total testosterone levels 194,453 European ancestry men A 0.986175 6E-38 37.222 rs79391862 0.157273 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS1528191_H GCST90012114 Total testosterone levels 425,097 European ancestry individuals A 0.986046 2E-14 13.699 rs79391862 0.0407221 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS1529931_H GCST90012110 Sex hormone-binding globulin levels adjusted for BMI 368,929 European ancestry individuals A 0.98604 2E-121 120.699 rs79391862 0.0824289 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1538769_H GCST90104273 Sex hormone-binding globulin levels 196,901 European ancestry individuals C 0.013288 9E-34 33.046 rs79391862 0.167336 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:35192695
GWAS1539760_H GCST90104277 Sex hormone-binding globulin levels in postmenopausal women 92,911 European ancestry individuals C 0.013288 8E-20 19.097 rs79391862 0.180956 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:35192695
None Available GCST90104297 Sex hormone-binding globulin levels 4,522 African ancestry individuals, 196,901 European ancestry individuals ? NR 9E-34 33.046 rs79391862 12.118 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:35192695
GWAS1543349_H GCST90104281 Sex hormone-binding globulin levels in premenopausal women 43,477 European ancestry individuals C 0.013288 3E-7 6.523 rs79391862 0.155013 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:35192695
GWAS1550723_H GCST90026655 Low testosterone levels 13,409 European ancestry male cases, 98,267 European ancestry male controls C 0.01 3E-12 11.523 rs79391862 1.38 testosterone measurement (EFO:0004908)
 PMID:34337532
GWAS1570156_H GCST90012107 Sex hormone-binding globulin levels 189,473 European ancestry women A 0.985902 9E-35 34.046 rs79391862 0.0737538 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1571097_H GCST90012106 Sex hormone-binding globulin levels adjusted for BMI 188,908 European ancestry women A 0.985902 2E-46 45.699 rs79391862 0.0730502 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1573723_H GCST011350 C-reactive protein levels 76,081 European ancestry individuals, 127,395 Japanese ancestry individuals ? NR 1E-16 16 rs79391862 0.1672 C-reactive protein measurement (EFO:0004458)
 PMID:33339817
GWAS1587202_H GCST90027091 Sex hormone-binding globulin levels 148,248 British ancestry men C 0.01 3E-19 18.523 rs79391862 3.1 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:34321204
GWAS1588345_H GCST90027095 Total testosterone levels 148,248 British ancestry men C 0.01 1E-14 14 rs79391862 0.58 testosterone measurement (EFO:0004908)
 PMID:34321204
None Available GCST90027093 Sex hormone-binding globulin levels 104,632 British ancestry post-menopausal women C 0.01 3E-12 11.523 rs79391862 4.83 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:34321204
1 to 20 of 27 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90239670 GWAS Catalog

Note Type Note Reference