GWAS1488064_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1488064_H (serum metabolite measurement QTL GWAS1488064 (human)) Homo sapiens

Symbol: GWAS1488064_H
Name: serum metabolite measurement QTL GWAS1488064 (human)
RGD ID: 597391990
Trait: serum metabolite measurement
LOD Score: Not Available
P Value: 4.0E-27
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,395,681 - 58,395,682RGD_MAPPER_PIPELINEGRCh38
GRCh371558,687,880 - 58,687,881RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1488064_HHumanserum metabolite measurement  IAGPrs493258405850206 GWAS_CATALOGPMID:31636271

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs493258)
Human AssemblyChrPosition (strand)Source
GRCh381558,395,681 - 58,395,682RGD_MAPPER_PIPELINE


1 to 10 of 20 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597426107GWAS1522181_Hphosphatidylethanolamine measurement QTL GWAS1522181 (human)2e-11phosphatidylethanolamine measurement155839568158395682Human
597416922GWAS1512996_Hphosphatidylcholine measurement QTL GWAS1512996 (human)6e-63phosphatidylcholine measurement155839568158395682Human
597418879GWAS1514953_Hphosphatidylcholine measurement QTL GWAS1514953 (human)2e-65phosphatidylcholine measurement155839568158395682Human
597418237GWAS1514311_Hphosphatidylcholine measurement QTL GWAS1514311 (human)1e-74phosphatidylcholine measurement155839568158395682Human
597393565GWAS1489639_Hserum metabolite measurement QTL GWAS1489639 (human)2e-22serum metabolite measurement155839568158395682Human
597428628GWAS1524702_Hphosphatidylethanolamine measurement QTL GWAS1524702 (human)5e-11phosphatidylethanolamine measurement155839568158395682Human
597416978GWAS1513052_Hlysophosphatidylethanolamine measurement QTL GWAS1513052 (human)1e-12lysophosphatidylethanolamine measurement155839568158395682Human
597428373GWAS1524447_Hphosphatidylcholine measurement QTL GWAS1524447 (human)8e-26phosphatidylcholine measurement155839568158395682Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597391990GWAS1488064_Hserum metabolite measurement QTL GWAS1488064 (human)4e-27serum metabolite measurement155839568158395682Human

1 to 10 of 20 rows


1 to 20 of 20 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1488064_H GCST009240 Serum metabolite levels (CMS) 6,263 Finnish ancestry men ? NR 4E-27 26.398 rs493258 0.07406151 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1474686_H GCST000653 Age-related macular degeneration 979 cases, 1,709 controls C 0.55 2E-8 7.699 rs493258 1.16 age-related macular degeneration (EFO:0001365)
 PMID:20385826
GWAS1489265_H GCST009242 Serum metabolite levels 6,263 Finnish ancestry men ? NR 7E-7 6.155 rs493258 0.07380134 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1489639_H GCST009240 Serum metabolite levels (CMS) 6,263 Finnish ancestry men ? NR 2E-22 21.699 rs493258 0.06686083 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1512996_H GCST90060312 Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 6E-63 62.222 rs493258 0.203488 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1513052_H GCST90060137 Lysophosphatidylethanolamine_16:0_[M-H]1- levels 13,814 British ancestry individuals T NR 1E-12 12 rs493258 0.0760845 lysophosphatidylethanolamine measurement (EFO:0010225)
 PMID:34503513
GWAS1514311_H GCST90060273 Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 1E-74 74 rs493258 0.216125 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1514953_H GCST90060316 Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 2E-65 64.699 rs493258 0.196576 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1521418_H GCST90060272 Phosphatidylethanolamine_36:4_[M-H]1- levels 13,814 British ancestry individuals T NR 7E-57 56.155 rs493258 0.181868 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1521585_H GCST90060247 Phosphatidylethanolamine_34:2_[M-H]1- levels 13,814 British ancestry individuals T NR 3E-31 30.523 rs493258 0.133252 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1522058_H GCST90060199 Diacylglycerol_38:6_[M+H-H2O]1+ levels 13,814 British ancestry individuals T NR 1E-14 14 rs493258 0.0771945 diglyceride measurement (EFO:0010223)
 PMID:34503513
GWAS1522091_H GCST90060274 Phosphatidylethanolamine_36:3_[M-H]1- levels 13,814 British ancestry individuals T NR 5E-13 12.302 rs493258 0.0745512 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1522181_H GCST90060689 Phosphatidylethanolamine(36:4)_[M-H]1- levels 5,662 Pakistani ancestry individuals C NR 2E-11 10.699 rs493258 0.0617 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1523946_H GCST90060249 Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 6E-50 49.222 rs493258 0.179682 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1524447_H GCST90060371 Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 8E-26 25.097 rs493258 0.152772 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1524476_H GCST90060310 Phosphatidylethanolamine_38:6_[M-H]1- levels 13,814 British ancestry individuals T NR 3E-68 67.523 rs493258 0.202475 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060690 Phosphatidylethanolamine(36:4)_[M+H]1+ levels 5,662 Pakistani ancestry individuals G NR 2E-11 10.699 rs493258 0.0828 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1524631_H GCST90060313 Phosphatidylethanolamine_38:5_[M-H]1- levels 13,814 British ancestry individuals T NR 6E-20 19.222 rs493258 0.0911152 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1524702_H GCST90060250 Phosphatidylethanolamine_34:1_[M-H]1- levels 13,814 British ancestry individuals T NR 5E-11 10.302 rs493258 0.0671905 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060738 Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals C NR 2E-11 10.699 rs493258 0.0361 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
1 to 20 of 20 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST009240 GWAS Catalog

Note Type Note Reference