GWAS1486898_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1486898_H (eosinophil count QTL GWAS1486898 (human)) Homo sapiens

Symbol: GWAS1486898_H
Name: eosinophil count QTL GWAS1486898 (human)
RGD ID: 597390824
Trait: eosinophil quantity   (VT:0002602)    
Measurement Type: blood eosinophil count   (CMO:0000033)    
LOD Score: Not Available
P Value: 3.0E-27
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3819,651,702 - 9,651,703RGD_MAPPER_PIPELINEGRCh38
GRCh3719,711,760 - 9,711,761RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1486898_HHumanblood eosinophil count  IAGPrs11806839405850206 GWAS_CATALOGPMID:32888494

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1486898_HHumaneosinophil quantity  IAGPrs11806839405850206 GWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1486898_HHumaneosinophil count  IAGPrs11806839405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322205PIK3CDphosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta196272589729114Human
329411526LOC129929343ATAC-STARR-seq lymphoblastoid silent region 228196516449652533Human


Peak: (rs11806839)
Human AssemblyChrPosition (strand)Source
GRCh3819,651,702 - 9,651,703RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597390824GWAS1486898_Heosinophil count QTL GWAS1486898 (human)3e-27eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)196517029651703Human
597392803GWAS1488877_Heosinophil percentage of leukocytes QTL GWAS1488877 (human)2e-19eosinophil quantity (VT:0002602)blood eosinophil count to total leukocyte count ratio (CMO:0000369)196517029651703Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1486898_H GCST90002381 Eosinophil counts 408,112 British individuals C 0.384008 3E-27 26.523 rs11806839 0.024747888 eosinophil count (EFO:0004842)
 PMID:32888494
GWAS1488877_H GCST90002382 Eosinophil percentage of white cells 408,112 British individuals C 0.384037 2E-19 18.699 rs11806839 0.020676868 eosinophil percentage of leukocytes (EFO:0007991)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST90002381 GWAS Catalog

Note Type Note Reference