GWAS1484409_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1484409_H (erythrocyte count QTL GWAS1484409 (human)) Homo sapiens

Symbol: GWAS1484409_H
Name: erythrocyte count QTL GWAS1484409 (human)
RGD ID: 597388335
Trait: erythrocyte count
Measurement Type: red blood cell count   (CMO:0000025)    
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38116,043,683 - 16,043,689RGD_MAPPER_PIPELINEGRCh38
GRCh37116,370,178 - 16,370,184RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1484409_HHumanred blood cell count  IAGPrs140307022405850206 GWAS_CATALOGPMID:27863252

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1484409_HHumanerythrocyte count  IAGPrs140307022405850206 GWAS_CATALOGPMID:27863252

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs140307022)
Human AssemblyChrPosition (strand)Source
GRCh38116,043,683 - 16,043,689RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597388335GWAS1484409_Herythrocyte count QTL GWAS1484409 (human)1e-09erythrocyte countred blood cell count (CMO:0000025)11604368316043689Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
597367655GWAS1463729_Hhemoglobin measurement QTL GWAS1463729 (human)5e-22hemoglobin measurementhemoglobin measurement (CMO:0000508)11604368316043689Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1484409_H GCST004601 Red blood cell count 172,952 European ancestry individuals AGCTCT 0.3999 1E-9 9 rs140307022 0.02246955 erythrocyte count (EFO:0004305)
 PMID:27863252
GWAS1463729_H GCST90002384 Hemoglobin 408,112 British individuals AGCTCT 0.399727 5E-22 21.302 rs140307022 0.02223228 hemoglobin measurement (EFO:0004509)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST004601 GWAS Catalog

Note Type Note Reference