GWAS1483855_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1483855_H (BMI-adjusted waist circumference QTL GWAS1483855 (human)) Homo sapiens

Symbol: GWAS1483855_H
Name: BMI-adjusted waist circumference QTL GWAS1483855 (human)
RGD ID: 597387781
Trait: body size trait   (VT:0100005)    
LOD Score: Not Available
P Value: 4.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38116,981,663 - 16,981,664RGD_MAPPER_PIPELINEGRCh38
GRCh37117,308,158 - 17,308,159RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1483855_HHumanbody size trait  IAGPrs9435732405850206 GWAS_CATALOGPMID:28448500

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1483855_HHumanBMI-adjusted waist circumference  IAGPrs9435732405850206 GWAS_CATALOGPMID:28448500

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs9435732)
Human AssemblyChrPosition (strand)Source
GRCh38116,981,663 - 16,981,664RGD_MAPPER_PIPELINE


1 to 10 of 29 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597435486GWAS1531560_HBMI-adjusted waist circumference QTL GWAS1531560 (human)0.000008body size trait (VT:0100005)11698166316981664Human
597389273GWAS1485347_HBMI-adjusted waist circumference QTL GWAS1485347 (human)3e-11body size trait (VT:0100005)11698166316981664Human
597466079GWAS1562153_HBMI-adjusted waist circumference QTL GWAS1562153 (human)3e-09body size trait (VT:0100005)11698166316981664Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
597467409GWAS1563483_HBMI-adjusted waist circumference QTL GWAS1563483 (human)4e-12body size trait (VT:0100005)11698166316981664Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597367177GWAS1463251_Hwaist-hip ratio QTL GWAS1463251 (human)2e-10wellness/fitness trait (VT:1000152)voluntary body movement measurement (CMO:0000954)11698166316981664Human
597387528GWAS1483602_HBMI-adjusted waist circumference QTL GWAS1483602 (human)7e-10body size trait (VT:0100005)11698166316981664Human
597346382GWAS1442456_HBMI-adjusted waist circumference QTL GWAS1442456 (human)3e-08body size trait (VT:0100005)11698166316981664Human

1 to 10 of 29 rows


1 to 20 of 30 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1483855_H GCST004562 Waist circumference adjusted for body mass index 2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals C 0.7313000000000001 4E-10 9.398 rs9435732 0.039 BMI-adjusted waist circumference (EFO:0007789)
 PMID:28448500
GWAS1112442_H GCST004501 Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction) 97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men T 0.2658 3E-19 18.523 rs9435732 N/A smoking behavior (EFO:0004318)
BMI-adjusted waist circumference (EFO:0007789)
 PMID:28443625
GWAS1112443_H GCST004501 Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction) 97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men T 0.2658 2E-12 11.699 rs9435732 N/A smoking behavior (EFO:0004318)
BMI-adjusted waist circumference (EFO:0007789)
 PMID:28443625
GWAS1112444_H GCST004501 Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction) 97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men T 0.2658 1E-8 8 rs9435732 N/A smoking behavior (EFO:0004318)
BMI-adjusted waist circumference (EFO:0007789)
 PMID:28443625
GWAS1441035_H GCST004063 Waist circumference adjusted for body mass index up to 56,910 European ancestry men, up to 86,570 European ancestry women T 0.2715 4E-16 15.398 rs9435732 0.0309 BMI-adjusted waist circumference (EFO:0007789)
 PMID:25673412
GWAS1442456_H GCST004063 Waist circumference adjusted for body mass index up to 56,910 European ancestry men, up to 86,570 European ancestry women T 0.2715 3E-8 7.523 rs9435732 0.0272 BMI-adjusted waist circumference (EFO:0007789)
 PMID:25673412
GWAS1463251_H GCST007067 Waist-hip ratio approximately 458,000 European ancestry individuals ? NR 2E-10 9.699 rs9435732 N/A waist-hip ratio (EFO:0004343)
 PMID:30595370
GWAS1464913_H GCST009867 Waist circumference adjusted for body mass index 457,690 European ancestry individuals ? NR 3E-46 45.523 rs9435732 N/A BMI-adjusted waist circumference (EFO:0007789)
 PMID:31669095
GWAS1483342_H GCST004562 Waist circumference adjusted for body mass index 2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals C 0.7301 7E-14 13.155 rs9435732 0.0297 BMI-adjusted waist circumference (EFO:0007789)
 PMID:28448500
GWAS1483602_H GCST004562 Waist circumference adjusted for body mass index 2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals C 0.7301 7E-10 9.155 rs9435732 0.0357 BMI-adjusted waist circumference (EFO:0007789)
 PMID:28448500
GWAS1485133_H GCST004562 Waist circumference adjusted for body mass index 2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals C 0.7313000000000001 8E-13 12.097 rs9435732 0.0303 BMI-adjusted waist circumference (EFO:0007789)
 PMID:28448500
GWAS1485347_H GCST004562 Waist circumference adjusted for body mass index 2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals C 0.7301 3E-11 10.523 rs9435732 0.0391 BMI-adjusted waist circumference (EFO:0007789)
 PMID:28448500
GWAS1500175_H GCST004063 Waist circumference adjusted for body mass index up to 56,910 European ancestry men, up to 86,570 European ancestry women T 0.2715 9E-12 11.046 rs9435732 0.0365 BMI-adjusted waist circumference (EFO:0007789)
 PMID:25673412
GWAS1506927_H GCST009858 Waist-to-hip ratio adjusted for BMI 457,690 European ancestry individuals ? NR 5E-10 9.302 rs9435732 N/A BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:31669095
GWAS1531029_H GCST004563 Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction) 2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals ? 0.7301 1E-11 11 rs9435732 N/A BMI-adjusted waist circumference (EFO:0007789)
physical activity measurement (EFO:0008002)
 PMID:28448500
None Available GCST004564 Waist circumference adjusted for BMI in active individuals 1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals C 0.7266 4E-10 9.398 rs9435732 0.0431 BMI-adjusted waist circumference (EFO:0007789)
 PMID:28448500
GWAS1531560_H GCST004564 Waist circumference adjusted for BMI in active individuals 1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals C 0.7351 0.000008 5.097 rs9435732 0.0276 BMI-adjusted waist circumference (EFO:0007789)
 PMID:28448500
None Available GCST004564 Waist circumference adjusted for BMI in active individuals 1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals C 0.7313000000000001 2E-12 11.699 rs9435732 0.0336 BMI-adjusted waist circumference (EFO:0007789)
 PMID:28448500
None Available GCST004564 Waist circumference adjusted for BMI in active individuals 1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals C 0.7293000000000001 2E-10 9.699 rs9435732 0.0429 BMI-adjusted waist circumference (EFO:0007789)
 PMID:28448500
None Available GCST004564 Waist circumference adjusted for BMI in active individuals 1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals C 0.7301 2E-12 11.699 rs9435732 0.0324 BMI-adjusted waist circumference (EFO:0007789)
 PMID:28448500
1 to 20 of 30 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST004562 GWAS Catalog
  GCST004564 GWAS Catalog

Note Type Note Reference