GWAS1482595_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1482595_H (inflammatory bowel disease QTL GWAS1482595 (human)) Homo sapiens

Symbol: GWAS1482595_H
Name: inflammatory bowel disease QTL GWAS1482595 (human)
RGD ID: 597386521
Trait: inflammatory bowel disease
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381399,304,368 - 99,304,369RGD_MAPPER_PIPELINEGRCh38
GRCh371399,956,622 - 99,956,623RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1482595_HHumaninflammatory bowel disease  IAGPrs9557195405850206 GWAS_CATALOGPMID:28067908

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1482595_HHumanInflammation of the large intestine  IAGPrs9557195405850206 GWAS_CATALOGPMID:28067908
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1482595_HHumaninflammatory bowel disease  IAGPrs9557195405850206 GWAS_CATALOGPMID:28067908

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1323278UBAC2UBA domain containing 2139920085499386504Human
1346200GPR183G protein-coupled receptor 183139929453999307399Human
155779289LOC127826723H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:99956301-99956847139930404799304593Human


Peak: (rs9557195)
Human AssemblyChrPosition (strand)Source
GRCh381399,304,368 - 99,304,369RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289426BW213_HBody weight QTL 213 (human)2.780.0002Body weightBMI1384267977110267977Human
597386521GWAS1482595_Hinflammatory bowel disease QTL GWAS1482595 (human)0.000001inflammatory bowel disease139930436899304369Human
597376248GWAS1472322_Hinflammatory bowel disease QTL GWAS1472322 (human)2e-14inflammatory bowel disease139930436899304369Human
2289433BW340_HBody weight QTL 340 (human)3.11Body morphometrywaist circumference1384267977110267977Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1482595_H GCST004131 Inflammatory bowel disease 25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls ? NR 0.000001 6 rs9557195 N/A inflammatory bowel disease (EFO:0003767)
 PMID:28067908
GWAS1472322_H GCST001725 Inflammatory bowel disease 12,924 European ancestry cases, 21,442 European ancestry controls T 0.772 2E-14 13.699 rs9557195 1.112 inflammatory bowel disease (EFO:0003767)
 PMID:23128233
Database
Acc Id
Source(s)
GWAS Catalog GCST004131 GWAS Catalog

Note Type Note Reference