GWAS1477871_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1477871_H (age at menarche QTL GWAS1477871 (human)) Homo sapiens

Symbol: GWAS1477871_H
Name: age at menarche QTL GWAS1477871 (human)
RGD ID: 597381797
Trait: age at menarche
LOD Score: Not Available
P Value: 5.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38120,847,936 - 20,847,937RGD_MAPPER_PIPELINEGRCh38
GRCh37121,174,429 - 21,174,430RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1477871_HHumanage at menarche  IAGPrs17449243405850206 GWAS_CATALOGPMID:30595370

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322792EIF4G3eukaryotic translation initiation factor 4 gamma 312080629221176897Human


Peak: (rs17449243)
Human AssemblyChrPosition (strand)Source
GRCh38120,847,936 - 20,847,937RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597363226GWAS1459300_Hwellbeing measurement QTL GWAS1459300 (human)0.000006wellness/fitness trait (VT:1000152)12084793620847937Human
597515926GWAS1612000_Hcigarettes per day measurement QTL GWAS1612000 (human)2e-09cigarettes per day measurement12084793620847937Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597381797GWAS1477871_Hage at menarche QTL GWAS1477871 (human)5e-08age at menarche12084793620847937Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1477871_H GCST007078 Menarche (age at onset) approximately 242,000 European ancestry individuals ? NR 5E-8 7.302 rs17449243 N/A age at menarche (EFO:0004703)
 PMID:30595370
GWAS1459300_H GCST003766 Subjective well-being 298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals T 0.8482 0.000006 5.222 rs17449243 0.0169 wellbeing measurement (EFO:0007869)
 PMID:27089181
GWAS1789231_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals C 0.1258 5E-35 34.302 rs17449243 0.0133 body height (OBA:VT0001253)
 PMID:36224396
GWAS1612000_H GCST90243987 Cigarettes smoked per day 783,784 European ancestry, East Asian ancestry, Hispanic or Latin American, African ancestry individuals C 0.127 2E-9 8.699 rs17449243 0.0144 cigarettes per day measurement (EFO:0006525)
 PMID:36477530
Database
Acc Id
Source(s)
GWAS Catalog GCST007078 GWAS Catalog

Note Type Note Reference