GWAS1474091_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1474091_H (psoriasis QTL GWAS1474091 (human)) Homo sapiens

Symbol: GWAS1474091_H
Name: psoriasis QTL GWAS1474091 (human)
RGD ID: 597378017
Trait: psoriasis
LOD Score: Not Available
P Value: 1.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38123,757,159 - 23,757,160RGD_MAPPER_PIPELINEGRCh38
GRCh37124,083,649 - 24,083,650RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1474091_HHumanpsoriasis  IAGPrs2076346405850206 GWAS_CATALOGPMID:25574825

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1474091_HHumanPsoriasiform dermatitis  IAGPrs2076346405850206 GWAS_CATALOGPMID:25574825
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1474091_HHumanpsoriasis  IAGPrs2076346405850206 GWAS_CATALOGPMID:25574825

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
736026ELOAelongin A12374347123762059Human


Peak: (rs2076346)
Human AssemblyChrPosition (strand)Source
GRCh38123,757,159 - 23,757,160RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597378017GWAS1474091_Hpsoriasis QTL GWAS1474091 (human)1e-11psoriasis12375715923757160Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1474091_H GCST002740 Inflammatory skin disease 2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls ? NR 1E-11 11 rs2076346 N/A psoriasis (EFO:0000676)
 PMID:25574825
Database
Acc Id
Source(s)
GWAS Catalog GCST002740 GWAS Catalog

Note Type Note Reference