GWAS1471533_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1471533_H (cholesteryl ester 16:0 measurement QTL GWAS1471533 (human)) Homo sapiens

Symbol: GWAS1471533_H
Name: cholesteryl ester 16:0 measurement QTL GWAS1471533 (human)
RGD ID: 597375459
Trait: blood lipid amount   (VT:0003949)    
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3814,060,251 - 4,060,252RGD_MAPPER_PIPELINEGRCh38
GRCh3714,120,311 - 4,120,312RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1471533_HHumanblood lipid amount  IAGPrs7514530405850206 GWAS_CATALOGPMID:23823483

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1471533_HHumancholesteryl ester 16:0 measurement  IAGPrs7514530405850206 GWAS_CATALOGPMID:23823483

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs7514530)
Human AssemblyChrPosition (strand)Source
GRCh3814,060,251 - 4,060,252RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597375459GWAS1471533_Hcholesteryl ester 16:0 measurement QTL GWAS1471533 (human)0.000008blood lipid amount (VT:0003949)140602514060252Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1471533_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000008 5.097 rs7514530 0.17613798 cholesteryl ester 16:0 measurement (EFO:0010341)
 PMID:23823483
Database
Acc Id
Source(s)
GWAS Catalog GCST009391 GWAS Catalog

Note Type Note Reference