GWAS1471298_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1471298_H (forced expiratory volume QTL GWAS1471298 (human)) Homo sapiens

Symbol: GWAS1471298_H
Name: forced expiratory volume QTL GWAS1471298 (human)
RGD ID: 597375224
Trait: forced expiratory volume
Measurement Type: forced expiratory volume   (CMO:0000254)    
LOD Score: Not Available
P Value: 7.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,286,197 - 22,286,198RGD_MAPPER_PIPELINEGRCh38
GRCh37122,612,690 - 22,612,691RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1471298_HHumanforced expiratory volume  IAGPrs12737805405850206 GWAS_CATALOGPMID:30804560

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1471298_HHumanforced expiratory volume  IAGPrs12737805405850206 GWAS_CATALOGPMID:30804560

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs12737805)
Human AssemblyChrPosition (strand)Source
GRCh38122,286,197 - 22,286,198RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597375224GWAS1471298_Hforced expiratory volume QTL GWAS1471298 (human)7e-13forced expiratory volumeforced expiratory volume (CMO:0000254)12228619722286198Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597364981GWAS1461055_Hvital capacity QTL GWAS1461055 (human)4e-13vital capacity12228619722286198Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1471298_H GCST007432 FEV1 321,047 European ancestry individuals A 0.7787 7E-13 12.155 rs12737805 0.0203 forced expiratory volume (EFO:0004314)
 PMID:30804560
GWAS1461055_H GCST007429 Lung function (FVC) 321,047 European ancestry individuals A 0.7787 4E-13 12.398 rs12737805 0.0206 vital capacity (EFO:0004312)
 PMID:30804560
Database
Acc Id
Source(s)
GWAS Catalog GCST007432 GWAS Catalog

Note Type Note Reference