GWAS1470464_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1470464_H (ovarian carcinoma QTL GWAS1470464 (human)) Homo sapiens

Symbol: GWAS1470464_H
Name: ovarian carcinoma QTL GWAS1470464 (human)
RGD ID: 597374390
Trait: ovarian carcinoma
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,164,231 - 22,164,232RGD_MAPPER_PIPELINEGRCh38
GRCh37122,490,724 - 22,490,725RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1470464_HHumanovarian carcinoma  IAGPrs7521902405850206 GWAS_CATALOGPMID:20852632

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1470464_HHumanOvarian carcinoma  IAGPrs7521902405850206 GWAS_CATALOGPMID:20852632
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1470464_HHumanovarian carcinoma  IAGPrs7521902405850206 GWAS_CATALOGPMID:20852632

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38635125LOC105376850uncharacterized LOC10537685012216334322175759Human


Peak: (rs7521902)
Human AssemblyChrPosition (strand)Source
GRCh38122,164,231 - 22,164,232RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597358494GWAS1454568_Hendometriosis QTL GWAS1454568 (human)3e-11endometriosis12216423122164232Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597374390GWAS1470464_Hovarian carcinoma QTL GWAS1470464 (human)0.000005ovarian carcinoma12216423122164232Human
597016395GWAS1112469_HBMI-adjusted hip circumference QTL GWAS1112469 (human)3e-08BMI-adjusted hip circumferencehip circumference (CMO:0000014)12216423122164232Human
597016427GWAS1112501_HBMI-adjusted hip circumference QTL GWAS1112501 (human)0.000003BMI-adjusted hip circumferencehip circumference (CMO:0000014)12216423122164232Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1470464_H GCST000802 Ovarian cancer 1,768 European ancestry cases, 2,354 European ancestry controls ? NR 0.000005 5.302 rs7521902 1.12 ovarian carcinoma (EFO:0001075)
 PMID:20852632
GWAS1112469_H GCST004067 Hip circumference adjusted for BMI up to 56,910 European ancestry men, up to 86,570 European ancestry women A 0.2247 3E-8 7.523 rs7521902 0.0242 BMI-adjusted hip circumference (EFO:0008039)
 PMID:25673412
GWAS1112501_H GCST004067 Hip circumference adjusted for BMI up to 56,910 European ancestry men, up to 86,570 European ancestry women A 0.2247 0.000003 5.523 rs7521902 0.029 BMI-adjusted hip circumference (EFO:0008039)
 PMID:25673412
GWAS1701590_H GCST001482 Lumbar spine bone mineral density Up to 32,961 European and East Asian ancestry individuals A 0.31 1E-10 10 rs7521902 0.05 bone density (OBA:1000110)
 PMID:22504420
GWAS1454568_H GCST001720 Endometriosis 3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls A 0.238 3E-11 10.523 rs7521902 1.19 endometriosis (EFO:0001065)
 PMID:23104006
GWAS1789339_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals A 0.2468 1E-82 82 rs7521902 0.0139 body height (OBA:VT0001253)
 PMID:36224396
Database
Acc Id
Source(s)
GWAS Catalog GCST000802 GWAS Catalog

Note Type Note Reference