GWAS1469510_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1469510_H (endometriosis QTL GWAS1469510 (human)) Homo sapiens

Symbol: GWAS1469510_H
Name: endometriosis QTL GWAS1469510 (human)
RGD ID: 597373436
Trait: endometriosis
LOD Score: Not Available
P Value: 7.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,113,027 - 22,113,028RGD_MAPPER_PIPELINEGRCh38
GRCh37122,439,520 - 22,439,521RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1469510_HHumanendometriosis  IAGPrs4654783405850206 GWAS_CATALOGPMID:23472165

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1469510_HHumanEndometriosis  IAGPrs4654783405850206 GWAS_CATALOGPMID:23472165
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1469510_HHumanendometriosis  IAGPrs4654783405850206 GWAS_CATALOGPMID:23472165

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs4654783)
Human AssemblyChrPosition (strand)Source
GRCh38122,113,027 - 22,113,028RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597373437GWAS1469511_Hendometriosis QTL GWAS1469511 (human)0.000006endometriosis12211302722113028Human
597373436GWAS1469510_Hendometriosis QTL GWAS1469510 (human)7e-09endometriosis12211302722113028Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1469510_H GCST001894 Endometriosis 1,514 European ancestry cases, 12,660 European ancestry controls T 0.152 7E-9 8.155 rs4654783 1.28 endometriosis (EFO:0001065)
 PMID:23472165
GWAS1469511_H GCST001894 Endometriosis 1,514 European ancestry cases, 12,660 European ancestry controls G 0.709 0.000006 5.222 rs4654783 1.19 endometriosis (EFO:0001065)
 PMID:23472165
GWAS1811588_H GCST90018739 Height 165,056 East Asian ancestry individuals C 0.298322 4E-9 8.398 rs4654783 0.0128221 body height (OBA:VT0001253)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST001894 GWAS Catalog

Note Type Note Reference