GWAS1463678_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1463678_H (gut microbiome measurement QTL GWAS1463678 (human)) Homo sapiens

Symbol: GWAS1463678_H
Name: gut microbiome measurement QTL GWAS1463678 (human)
RGD ID: 597367604
Trait: gut microbiome measurement
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381862,025,808 - 62,025,809RGD_MAPPER_PIPELINEGRCh38
GRCh371859,693,041 - 59,693,042RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1463678_HHumangut microbiome measurement  IAGPrs976508405850206 GWAS_CATALOGPMID:33462482

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322753PIGNphosphatidylinositol glycan anchor biosynthesis class N186201761562187056Human


Peak: (rs976508)
Human AssemblyChrPosition (strand)Source
GRCh381862,025,808 - 62,025,809RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597367604GWAS1463678_Hgut microbiome measurement QTL GWAS1463678 (human)0.000002gut microbiome measurement186202580862025809Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1463678_H GCST90011329 G_Coprococcus abundance 8,956 German ancestry individuals ? NR 0.000002 5.699 rs976508 0.09061822 gut microbiome measurement (EFO:0007874)
 PMID:33462482
Database
Acc Id
Source(s)
GWAS Catalog GCST90011329 GWAS Catalog

Note Type Note Reference