GWAS1441682_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1441682_H (color vision disorder QTL GWAS1441682 (human)) Homo sapiens

Symbol: GWAS1441682_H
Name: color vision disorder QTL GWAS1441682 (human)
RGD ID: 597345608
Trait: color vision disorder
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,706,765 - 22,706,766RGD_MAPPER_PIPELINEGRCh38
GRCh37123,033,258 - 23,033,259RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs78583592)
Human AssemblyChrPosition (strand)Source
GRCh38122,706,765 - 22,706,766RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597345608GWAS1441682_Hcolor vision disorder QTL GWAS1441682 (human)0.000001color vision disorder12270676522706766Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1441682_H GCST90301670 Color vision defects (Deutan-Protan) 31 Silk Road (founder/genetic isolate) cases, 483 Silk Road (founder/genetic isolate) controls A 0.984 0.000001 6 rs78583592 0.3149933 PMID:37359372
Database
Acc Id
Source(s)
GWAS Catalog GCST90301670 GWAS Catalog

Note Type Note Reference