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Symbol:

GWAS1431564_H

Name:

COVID-19 QTL GWAS1431564 (human)

RGD ID:

597335490

Trait:

COVID-19

LOD Score:

Not Available

P Value:

1.0E-5

Variance:

Not Available

Position

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh38	15	35,027,180 - 35,027,181	RGD_MAPPER_PIPELINE	GRCh38
GRCh37	15	35,319,381 - 35,319,382	RGD_MAPPER_PIPELINE	GRCh37

Population Stats:

Not Available

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GWAS1431564_H	Human	COVID-19		IAGP	rs8029574	405850206	Based on the MONDO term ID from GWAS	GWAS_CATALOG	PMID:35224516

#	Reference Title	Reference Citation
1.	RGD GWAS Catalog Import Pipeline	RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	35,027,180 - 35,027,181	RGD_MAPPER_PIPELINE

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2289410	BW327_H	Body weight QTL 327 (human)	3.32	0.0001	Body fat amount		15	19980129	45980129	Human
1643273	BW330_H	Body Weight QTL 330 (human)	1.05	0.014	Body weight	body mass index	15	26866719	52866719	Human
2289430	BMD7_H	Bone mineral density QTL 7 (human)	3.32	0.0001	Bone mineral density		15	19980129	45980129	Human
1559411	SCL107_H	Serum cholesterol level QTL 107 (human)	3.88		Lipid level	triglyceride	15	26543552	52543552	Human
2299958	PRSTS330_H	Prostate tumor susceptibility QTL 330 (human)	1.02	0.0151	Prostate tumor susceptibility		15	34790230	60790230	Human
597335490	GWAS1431564_H	COVID-19 QTL GWAS1431564 (human)		0.00001	COVID-19		15	35027180	35027181	Human
1643523	BW284_H	Body Weight QTL 284 (human)	1.95	0.0013	Body weight		15	21792889	47792889	Human
1559354	LDLPS4_H	Low density lipoprotein particle size QTL 4 (human)	2.2	0.019	LDL particle size		15	34790230	60790230	Human
2289420	BW314_H	Body weight QTL 314 (human)	2.72	0.0003	Body weight	lean mass	15	19980129	45980129	Human

Data has come from the GWAS Catalog		Download
The highlighted row represents the current QTL

QTL	GWAS Catalog Study	Disease Trait	Study Size	Risk Allele	Risk Allele Frequency	P Value	P Value MLOG	Peak Marker	Reported Odds Ratio or Beta-coefficient	Ontology Accession	PubMed
GWAS1431564_H	GCST90104730	COVID-19 (covid vs negative)	810 South Asian ancestry cases, 1,516 South Asian ancestry controls	A	0.69882151	0.00001	5	rs8029574	0.31148		PMID:35224516

Database	Acc Id	Source(s)
GWAS Catalog	GCST90104730	GWAS Catalog

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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