GWAS1429078_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1429078_H (S-warfarin measurement QTL GWAS1429078 (human)) Homo sapiens

Symbol: GWAS1429078_H
Name: S-warfarin measurement QTL GWAS1429078 (human)
RGD ID: 597333004
Trait: S-warfarin measurement
LOD Score: Not Available
P Value: 3.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38314,472,862 - 14,472,863RGD_MAPPER_PIPELINEGRCh38
GRCh37314,514,370 - 14,514,371RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1429078_HHumanS-warfarin measurement  IAGPrs9836540405850206 GWAS_CATALOGPMID:36210801

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
69004SLC6A6solute carrier family 6 member 631440257614489349Human
155652057LOC127396809H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:14513531-1451442231447202314472914Human


Peak: (rs9836540)
Human AssemblyChrPosition (strand)Source
GRCh38314,472,862 - 14,472,863RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597333004GWAS1429078_HS-warfarin measurement QTL GWAS1429078 (human)0.000003S-warfarin measurement31447286214472863Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1429078_H GCST90129562 S-warfarin levels 531 Sub-Saharan African ancestry individuals ? NR 0.000003 5.523 rs9836540 1.16977 S-warfarin measurement (EFO:0803323)
 PMID:36210801
Database
Acc Id
Source(s)
GWAS Catalog GCST90129562 GWAS Catalog

Note Type Note Reference