GWAS1427159_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1427159_H (basal cell carcinoma QTL GWAS1427159 (human)) Homo sapiens

Symbol: GWAS1427159_H
Name: basal cell carcinoma QTL GWAS1427159 (human)
RGD ID: 597331085
Trait: basal cell carcinoma
LOD Score: Not Available
P Value: 2E-96
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38117,445,652 - 17,445,653RGD_MAPPER_PIPELINEGRCh38
GRCh37117,772,148 - 17,772,149RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1427159_HHumanbasal cell carcinoma  IAGPrs12122129405850206 GWAS_CATALOGPMID:38182794

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1427159_HHumanBasal cell carcinoma  IAGPrs12122129405850206 GWAS_CATALOGPMID:38182794
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1427159_HHumanbasal cell carcinoma  IAGPrs12122129405850206 GWAS_CATALOGPMID:38182794

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs12122129)
Human AssemblyChrPosition (strand)Source
GRCh38117,445,652 - 17,445,653RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597328922GWAS1424996_Hbasal cell carcinoma QTL GWAS1424996 (human)2e-99basal cell carcinoma11744565217445653Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597331085GWAS1427159_Hbasal cell carcinoma QTL GWAS1427159 (human)2e-96basal cell carcinoma11744565217445653Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1427159_H GCST90328132 Basal cell carcinoma 49,905 European ancestry cases, 752,392 European ancestry controls A NR 2E-96 95.699 rs12122129 1.1678 basal cell carcinoma (EFO:0004193)
 PMID:38182794
GWAS1424996_H GCST90328134 Basal cell carcinoma 49,905 European ancestry cases, 752,392 European ancestry controls, 626 Hispanic or Latin American cases, 9,842 Hispanic or Latin American controls A NR 2E-99 98.699 rs12122129 1.1697 basal cell carcinoma (EFO:0004193)
 PMID:38182794
Database
Acc Id
Source(s)
GWAS Catalog GCST90328132 GWAS Catalog

Note Type Note Reference