GWAS1423571_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1423571_H (mean fractional anisotropy measurement QTL GWAS1423571 (human)) Homo sapiens

Symbol: GWAS1423571_H
Name: mean fractional anisotropy measurement QTL GWAS1423571 (human)
RGD ID: 597327497
Trait: mean fractional anisotropy measurement
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3816,803,713 - 6,803,714RGD_MAPPER_PIPELINEGRCh38
GRCh3716,863,773 - 6,863,774RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1423571_HHumanmean fractional anisotropy measurement  IAGPrs11122155405850206 GWAS_CATALOGPMID:37164063

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1318785CAMTA1calmodulin binding transcription activator 1167854547769706Human


Peak: (rs11122155)
Human AssemblyChrPosition (strand)Source
GRCh3816,803,713 - 6,803,714RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597327497GWAS1423571_Hmean fractional anisotropy measurement QTL GWAS1423571 (human)4e-08mean fractional anisotropy measurement168037136803714Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
597056600GWAS1152674_Hreaction time measurement QTL GWAS1152674 (human)0.0000004cognitive behavior trait (VT:0010450)168037136803714Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1423571_H GCST90281341 Corpus callosum fractional anisotropy (genu) 31,727 British ancestry individuals ? NR 4E-8 7.398 rs11122155 N/A mean fractional anisotropy measurement (EFO:0008399)
 PMID:37164063
GWAS1152674_H GCST006268 Reaction time 330,069 European ancestry individuals ? NR 4E-7 6.398 rs11122155 0.0088635 reaction time measurement (EFO:0008393)
 PMID:29844566
Database
Acc Id
Source(s)
GWAS Catalog GCST90281341 GWAS Catalog

Note Type Note Reference