GWAS1423363_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1423363_H (2'-O-methylcytidine measurement QTL GWAS1423363 (human)) Homo sapiens

Symbol: GWAS1423363_H
Name: 2'-O-methylcytidine measurement QTL GWAS1423363 (human)
RGD ID: 597327289
Trait: 2'-O-methylcytidine measurement
LOD Score: Not Available
P Value: 2.0E-22
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38120,589,096 - 20,589,097RGD_MAPPER_PIPELINEGRCh38
GRCh37120,915,589 - 20,915,590RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1423363_HHuman2'-O-methylcytidine measurement  IAGPrs3215400405850206 GWAS_CATALOGPMID:37253714

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322377CDAcytidine deaminase12058909720618903Human


Peak: (rs3215400)
Human AssemblyChrPosition (strand)Source
GRCh38120,589,096 - 20,589,097RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597327289GWAS1423363_H2'-O-methylcytidine measurement QTL GWAS1423363 (human)2e-222'-O-methylcytidine measurement12058909620589097Human
597084894GWAS1180968_Hserum metabolite measurement QTL GWAS1180968 (human)9e-15serum metabolite measurement12058909620589097Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597307940GWAS1404014_Hplatelet count QTL GWAS1404014 (human)1e-08platelet quantity (VT:0003179)platelet count (CMO:0000029)12058909620589097Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1423363_H GCST90300411 Metabolite levels (2'-O-methylcytidine) 6,160 European, Hispanic or African American individuals T 0.5407 2E-22 21.699 rs3215400 0.177 2'-O-methylcytidine measurement (EFO:0800635)
 PMID:37253714
GWAS1180968_H GCST012020 Serum metabolite levels 3,926 Hispanic/Latino individuals TC 0.47804 9E-15 14.046 rs3215400 0.175 serum metabolite measurement (EFO:0005653)
 PMID:33031748
GWAS1404014_H GCST90018969 Platelet count 350,474 European ancestry individuals, 148,623 East Asian ancestry individuals T NR 1E-8 8 rs3215400 0.0109 platelet count (EFO:0004309)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST90300411 GWAS Catalog

Note Type Note Reference