GWAS1419698_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1419698_H (colorectal cancer, inflammatory bowel disease QTL GWAS1419698 (human)) Homo sapiens

Symbol: GWAS1419698_H
Name: colorectal cancer, inflammatory bowel disease QTL GWAS1419698 (human)
RGD ID: 597323624
Trait: colorectal cancer, inflammatory bowel disease
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381549,763,853 - 49,763,854RGD_MAPPER_PIPELINEGRCh38
GRCh371550,056,050 - 50,056,051RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1419698_HHumaninflammatory bowel disease  IAGPrs541295405850206 GWAS_CATALOGPMID:36077729

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1419698_HHumanInflammation of the large intestine  IAGPrs541295405850206 GWAS_CATALOGPMID:36077729
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1419698_HHumaninflammatory bowel disease  IAGPrs541295405850206 GWAS_CATALOGPMID:36077729

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs541295)
Human AssemblyChrPosition (strand)Source
GRCh381549,763,853 - 49,763,854RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597323624GWAS1419698_Hcolorectal cancer, inflammatory bowel disease QTL GWAS1419698 (human)2e-08colorectal cancer, inflammatory bowel disease154976385349763854Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597323620GWAS1419694_Hcolorectal cancer QTL GWAS1419694 (human)5e-08colorectal cancer154976385349763854Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1419698_H GCST90179123 Colorectal cancer vs inflammatory bowel disease 835 Basque ancestry cases, 492 Basque ancestry controls G 0.055 2E-8 7.699 rs541295 0.2 inflammatory bowel disease (EFO:0003767)
 PMID:36077729
GWAS1419694_H GCST90179124 Colorectal cancer vs inflammatory bowel disease or controls 835 Basque ancestry cases, 1,432 Basque ancestry controls G 0.045 5E-8 7.302 rs541295 0.2 PMID:36077729
Database
Acc Id
Source(s)
GWAS Catalog GCST90179123 GWAS Catalog

Note Type Note Reference