GWAS1416374_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1416374_H (otosclerosis QTL GWAS1416374 (human)) Homo sapiens

Symbol: GWAS1416374_H
Name: otosclerosis QTL GWAS1416374 (human)
RGD ID: 597320300
Trait: otosclerosis
LOD Score: Not Available
P Value: 5.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382046,941,020 - 46,941,021RGD_MAPPER_PIPELINEGRCh38
GRCh372045,569,659 - 45,569,660RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1416374_HHumanotosclerosis  IAGPrs6066131405850206 GWAS_CATALOGPMID:36653343

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1416374_HHumanOtosclerosis  IAGPrs6066131405850206 GWAS_CATALOGPMID:36653343
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1416374_HHumanotosclerosis  IAGPrs6066131405850206 GWAS_CATALOGPMID:36653343

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350703EYA2EYA transcriptional coactivator and phosphatase 2204689484347188844Human


Peak: (rs6066131)
Human AssemblyChrPosition (strand)Source
GRCh382046,941,020 - 46,941,021RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
597320300GWAS1416374_Hotosclerosis QTL GWAS1416374 (human)5e-08otosclerosis204694102046941021Human
597055641GWAS1151715_HBMI-adjusted waist-hip ratio QTL GWAS1151715 (human)4e-32body size trait (VT:0100005)204694102046941021Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1416374_H GCST90129575 Otosclerosis 3,504 European ancestry cases, 861,198 European ancestry controls C 0.45 5E-8 7.302 rs6066131 1.14 otosclerosis (EFO:0004213)
 PMID:36653343
GWAS1151715_H GCST009858 Waist-to-hip ratio adjusted for BMI 457,690 European ancestry individuals ? NR 4E-32 31.398 rs6066131 N/A BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:31669095
Database
Acc Id
Source(s)
GWAS Catalog GCST90129575 GWAS Catalog

Note Type Note Reference