GWAS1410292_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1410292_H (cortical thickness QTL GWAS1410292 (human)) Homo sapiens

Symbol: GWAS1410292_H
Name: cortical thickness QTL GWAS1410292 (human)
RGD ID: 597314218
Trait: cortical thickness
LOD Score: Not Available
P Value: 4.0E-28
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381557,950,277 - 57,950,278RGD_MAPPER_PIPELINEGRCh38
GRCh371558,242,475 - 58,242,476RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1410292_HHumancortical thickness  IAGPrs10851632405850206 GWAS_CATALOGPMID:34910505

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs10851632)
Human AssemblyChrPosition (strand)Source
GRCh381557,950,277 - 57,950,278RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597314218GWAS1410292_Hcortical thickness QTL GWAS1410292 (human)4e-28cortical thickness155795027757950278Human
597131238GWAS1227312_Hcortical thickness QTL GWAS1227312 (human)1e-17cortical thickness155795027757950278Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1410292_H GCST90095131 Vertex-wise cortical thickness 33,748 European ancestry individuals A 0.44 4E-28 27.398 rs10851632 11.0 cortical thickness (EFO:0004840)
 PMID:34910505
GWAS1227312_H GCST90091061 Cortical thickness 35,657 White British ancestry individuals A 0.4442 1E-17 17 rs10851632 N/A cortical thickness (EFO:0004840)
 PMID:34560273
Database
Acc Id
Source(s)
GWAS Catalog GCST90095131 GWAS Catalog

Note Type Note Reference