GWAS1405654_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1405654_H (vaginal microbiome measurement QTL GWAS1405654 (human)) Homo sapiens

Symbol: GWAS1405654_H
Name: vaginal microbiome measurement QTL GWAS1405654 (human)
RGD ID: 597309580
Trait: vaginal microbiome measurement
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38118,062,081 - 18,062,082RGD_MAPPER_PIPELINEGRCh38
GRCh37118,388,575 - 18,388,576RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1405654_HHumanvaginal microbiome measurement  IAGPrs34983277405850206 GWAS_CATALOGPMID:34282934

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs34983277)
Human AssemblyChrPosition (strand)Source
GRCh38118,062,081 - 18,062,082RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597312187GWAS1408261_Hvaginal microbiome measurement QTL GWAS1408261 (human)0.000002vaginal microbiome measurement11806208118062082Human
597309580GWAS1405654_Hvaginal microbiome measurement QTL GWAS1405654 (human)0.000008vaginal microbiome measurement11806208118062082Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1405654_H GCST90026899 Vaginal microbiome MetaCyc pathway (PWY-7013|L-1,2-propanediol degradation) 315 Chinese ancestry individuals A NR 0.000008 5.097 rs34983277 1.124 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1408261_H GCST90026766 Vaginal microbiome MetaCyc pathway (P163-PWY|L-lysine fermentation to acetate and butanoate) 315 Chinese ancestry individuals A NR 0.000002 5.699 rs34983277 1.281 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
Database
Acc Id
Source(s)
GWAS Catalog GCST90026899 GWAS Catalog

Note Type Note Reference