GWAS1401057_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1401057_H (total blood protein measurement QTL GWAS1401057 (human)) Homo sapiens

Symbol: GWAS1401057_H
Name: total blood protein measurement QTL GWAS1401057 (human)
RGD ID: 597304983
Trait: total blood protein measurement
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 7.0E-27
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38690,155,151 - 90,155,152RGD_MAPPER_PIPELINEGRCh38
GRCh37690,864,870 - 90,864,871RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1401057_HHumanblood protein measurement  IAGPrs17711850405850206 GWAS_CATALOGPMID:34594039

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1401057_HHumantotal blood protein measurement  IAGPrs17711850405850206 GWAS_CATALOGPMID:34594039

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1319503BACH2BTB domain and CNC homolog 268992652890296843Human


Peak: (rs17711850)
Human AssemblyChrPosition (strand)Source
GRCh38690,155,151 - 90,155,152RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597163365GWAS1259439_Htype 1 diabetes mellitus QTL GWAS1259439 (human)2e-09type 1 diabetes mellitus69015515190155152Human
1298426BFD3_HBody fluid distribution QTL 3 (human)2.790.01Body fluid distributionimpedance ratio684873647110873647Human
597304983GWAS1401057_Htotal blood protein measurement QTL GWAS1401057 (human)7e-27total blood protein measurementblood protein measurement (CMO:0000028)69015515190155152Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1401057_H GCST90018976 Serum total protein levels 314,921 European ancestry individuals, 133,321 East Asian ancestry individuals C NR 7E-27 26.155 rs17711850 0.0282 total blood protein measurement (EFO:0004536)
 PMID:34594039
GWAS1259439_H GCST90018925 Type 1 diabetes 6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls C NR 2E-9 8.699 rs17711850 0.1236 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST90018976 GWAS Catalog

Note Type Note Reference