GWAS1400304_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1400304_H (protein lin-7 homolog B measurement QTL GWAS1400304 (human)) Homo sapiens

Symbol: GWAS1400304_H
Name: protein lin-7 homolog B measurement QTL GWAS1400304 (human)
RGD ID: 597304230
Trait: protein lin-7 homolog B measurement
LOD Score: Not Available
P Value: 4.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381728,344,170 - 28,344,171RGD_MAPPER_PIPELINEGRCh38
GRCh371726,671,196 - 26,671,197RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1400304_HHumanprotein lin-7 homolog B measurement  IAGPrs733914405850206 GWAS_CATALOGPMID:35870639

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1346510TNFAIP1TNF alpha induced protein 1172833576128347009Human


Peak: (rs733914)
Human AssemblyChrPosition (strand)Source
GRCh381728,344,170 - 28,344,171RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597119749GWAS1215823_Hblood protein measurement QTL GWAS1215823 (human)4e-29blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)172834417028344171Human
597302713GWAS1398787_Hlevel of protein phosphatase 1G in blood serum QTL GWAS1398787 (human)1e-17level of protein phosphatase 1G in blood serum172834417028344171Human
1298406BP16_HBlood pressure QTL 16 (human)0.0004Blood pressurehypertension susceptibility171477864740778647Human
597304178GWAS1400252_Hlevel of mRNA-capping enzyme in blood serum QTL GWAS1400252 (human)4e-12level of mRNA-capping enzyme in blood serum172834417028344171Human
597119374GWAS1215448_Hblood protein measurement QTL GWAS1215448 (human)2e-16blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)172834417028344171Human
597304230GWAS1400304_Hprotein lin-7 homolog B measurement QTL GWAS1400304 (human)4e-13protein lin-7 homolog B measurement172834417028344171Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1400304_H GCST90236222 Protein lin-7 homolog B level in Chronic kidney disease with hypertension and no diabetes (22990_20) 466 African American individuals G 0.56 4E-13 12.398 rs733914 0.45 protein lin-7 homolog B measurement (EFO:0021978)
 PMID:35870639
GWAS1215448_H GCST90090495 Serum levels of protein SLC30A3 5,357 Icelandic ancestry individuals C 0.451 2E-16 15.699 rs733914 0.148367 blood protein measurement (EFO:0007937)
 PMID:35078996
GWAS1215823_H GCST90086894 Serum levels of protein CRABP1 5,340 Icelandic ancestry individuals C 0.451 4E-29 28.398 rs733914 0.189036 blood protein measurement (EFO:0007937)
 PMID:35078996
GWAS1398787_H GCST90235887 Protein phosphatase 1G level in Chronic kidney disease with hypertension and no diabetes (21823_5) 466 African American individuals G 0.56 1E-17 17 rs733914 0.52 level of protein phosphatase 1G in blood serum (OBA:2042995)
 PMID:35870639
GWAS1400252_H GCST90235355 mRNA-capping enzyme level in Chronic kidney disease with hypertension and no diabetes (20135_85) 466 African American individuals G 0.56 4E-12 11.398 rs733914 0.43 level of mRNA-capping enzyme in blood serum (OBA:2043301)
 PMID:35870639
Database
Acc Id
Source(s)
GWAS Catalog GCST90236222 GWAS Catalog

Note Type Note Reference