GWAS1392709_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1392709_H (phosphatidylethanolamine measurement QTL GWAS1392709 (human)) Homo sapiens

Symbol: GWAS1392709_H
Name: phosphatidylethanolamine measurement QTL GWAS1392709 (human)
RGD ID: 597296635
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381552,567,279 - 52,567,280RGD_MAPPER_PIPELINEGRCh38
GRCh371552,859,476 - 52,859,477RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1392709_HHumanphosphatidylethanolamine measurement  IAGPrs555759137405850206 GWAS_CATALOGPMID:35668104

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1606318ARPP19cAMP regulated phosphoprotein 19155254704552569446Human


Peak: (rs555759137)
Human AssemblyChrPosition (strand)Source
GRCh381552,567,279 - 52,567,280RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597296635GWAS1392709_Hphosphatidylethanolamine measurement QTL GWAS1392709 (human)1e-08phosphatidylethanolamine measurement155256727952567280Human
597294346GWAS1390420_Hphosphatidylethanolamine measurement QTL GWAS1390420 (human)0.0000003phosphatidylethanolamine measurement155256727952567280Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1392709_H GCST90025033 Alkenylphosphatidylethanolamine (P-18:0/20:5) levels 6,057 European ancestry individuals A NR 1E-8 8 rs555759137 N/A phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1390420_H GCST90024419 Alkenylphosphatidylethanolamine (P-18:0/20:5) levels 4,492 European ancestry individuals A NR 3E-7 6.523 rs555759137 2.367 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
Database
Acc Id
Source(s)
GWAS Catalog GCST90025033 GWAS Catalog

Note Type Note Reference