GWAS1389391_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1389391_H (size QTL GWAS1389391 (human)) Homo sapiens

Symbol: GWAS1389391_H
Name: size QTL GWAS1389391 (human)
RGD ID: 597293317
Trait: size
LOD Score: Not Available
P Value: 3.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381548,392,761 - 48,392,762RGD_MAPPER_PIPELINEGRCh38
GRCh371548,684,958 - 48,684,959RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1389391_HHumansize  IAGPrs12592845405850206 GWAS_CATALOGPMID:38965376

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs12592845)
Human AssemblyChrPosition (strand)Source
GRCh381548,392,761 - 48,392,762RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
596953232GWAS1072751_Hsize QTL GWAS1072751 (human)3e-12size154839276148392762Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407007140GWAS656116_HBMI-adjusted waist circumference QTL GWAS656116 (human)7e-16body size trait (VT:0100005)154839276148392762Human
597293317GWAS1389391_Hsize QTL GWAS1389391 (human)3e-12size154839276148392762Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1389391_H GCST90309355 Body size (confirmatory factor analysis Factor 21) 329,172 European ancestry individuals ? NR 3E-12 11.523 rs12592845 N/A size (EFO:0001695)
 PMID:38965376
GWAS656116_H GCST009867 Waist circumference adjusted for body mass index 457,690 European ancestry individuals ? NR 7E-16 15.155 rs12592845 N/A BMI-adjusted waist circumference (EFO:0007789)
 PMID:31669095
GWAS1721785_H GCST007841 Height approximately 458,000 European ancestry individuals ? NR 3E-38 37.523 rs12592845 N/A body height (OBA:VT0001253)
 PMID:30595370
Database
Acc Id
Source(s)
GWAS Catalog GCST90309355 GWAS Catalog

Note Type Note Reference