GWAS1387779_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1387779_H (size QTL GWAS1387779 (human)) Homo sapiens

Symbol: GWAS1387779_H
Name: size QTL GWAS1387779 (human)
RGD ID: 597291705
Trait: size
LOD Score: Not Available
P Value: 9.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381538,359,831 - 38,359,832RGD_MAPPER_PIPELINEGRCh38
GRCh371538,652,032 - 38,652,033RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1387779_HHumansize  IAGPrs6495962405850206 GWAS_CATALOGPMID:38965376

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs6495962)
Human AssemblyChrPosition (strand)Source
GRCh381538,359,831 - 38,359,832RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597291705GWAS1387779_Hsize QTL GWAS1387779 (human)9e-11size153835983138359832Human
596952997GWAS1072516_Hsize QTL GWAS1072516 (human)9e-11size153835983138359832Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597109617GWAS1205691_Hmathematical ability QTL GWAS1205691 (human)3e-08mathematical ability153835983138359832Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1387779_H GCST90309355 Body size (confirmatory factor analysis Factor 21) 329,172 European ancestry individuals ? NR 9E-11 10.046 rs6495962 N/A size (EFO:0001695)
 PMID:38965376
GWAS1205691_H GCST006568 Highest math class taken (MTAG) 811,539 European ancestry individuals T 0.653 3E-8 7.523 rs6495962 0.0096 mathematical ability (EFO:0004875)
 PMID:30038396
Database
Acc Id
Source(s)
GWAS Catalog GCST90309355 GWAS Catalog

Note Type Note Reference