GWAS1387492_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1387492_H (response to radiation, lymphedema QTL GWAS1387492 (human)) Homo sapiens

Symbol: GWAS1387492_H
Name: response to radiation, lymphedema QTL GWAS1387492 (human)
RGD ID: 597291418
Trait: response to radiation, lymphedema
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38118,724,402 - 18,724,403RGD_MAPPER_PIPELINEGRCh38
GRCh37119,050,896 - 19,050,897RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1387492_HHumanresponse to radiation  IAGPrs643644405850206 GWAS_CATALOGPMID:37437607


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1604064PAX7paired box 711863084618748866Human


Peak: (rs643644)
Human AssemblyChrPosition (strand)Source
GRCh38118,724,402 - 18,724,403RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597291418GWAS1387492_Hresponse to radiation, lymphedema QTL GWAS1387492 (human)4e-08response to radiation, lymphedema11872440218724403Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1387492_H GCST90310286 Arm lymphoedema (>= grade 1) in breast cancer treated with radiotherapy 1,640 European ancestry individuals ? NR 4E-8 7.398 rs643644 1.4 response to radiation (GO:0009314)
 PMID:37437607
Database
Acc Id
Source(s)
GWAS Catalog GCST90310286 GWAS Catalog

Note Type Note Reference