GWAS1386129_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1386129_H (body weight QTL GWAS1386129 (human)) Homo sapiens

Symbol: GWAS1386129_H
Name: body weight QTL GWAS1386129 (human)
RGD ID: 597290055
Trait: body mass   (VT:0001259)    
Measurement Type: body weight   (CMO:0000012)    
LOD Score: Not Available
P Value: 4.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38975,896,973 - 75,896,974RGD_MAPPER_PIPELINEGRCh38
GRCh37978,511,889 - 78,511,890RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1386129_HHumanBody Weight  IAGPrs35307904405850206 GWAS_CATALOGPMID:34594039


Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1386129_HHumanbody weight  IAGPrs35307904405850206 GWAS_CATALOGPMID:34594039

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1386129_HHumanbody mass  IAGPrs35307904405850206 GWAS_CATALOGPMID:34594039

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1386129_HHumanbody weight  IAGPrs35307904405850206 GWAS_CATALOGPMID:34594039

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732125PCSK5proprotein convertase subtilisin/kexin type 597588980976362975Human


Peak: (rs35307904)
Human AssemblyChrPosition (strand)Source
GRCh38975,896,973 - 75,896,974RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597319035GWAS1415109_Hbody surface area QTL GWAS1415109 (human)2e-26body surface area97589697375896974Human
597293546GWAS1389620_Hsize QTL GWAS1389620 (human)8e-33size97589697375896974Human
597328253GWAS1424327_Hsexual dimorphism measurement QTL GWAS1424327 (human)2e-09sexual dimorphism measurement97589697375896974Human
597338845GWAS1434919_Hsexual dimorphism measurement QTL GWAS1434919 (human)4e-14sexual dimorphism measurement97589697375896974Human
596953503GWAS1073022_Hsize QTL GWAS1073022 (human)8e-33size97589697375896974Human
597269527GWAS1365601_HBMI-adjusted hip circumference QTL GWAS1365601 (human)1e-08BMI-adjusted hip circumferencehip circumference (CMO:0000014)97589697375896974Human
597290055GWAS1386129_Hbody weight QTL GWAS1386129 (human)4e-11body mass (VT:0001259)body weight (CMO:0000012)97589697375896974Human



1 to 14 of 14 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1386129_H GCST90018949 Weight 360,116 European ancestry individuals, 165,419 East Asian ancestry individuals A NR 4E-11 10.398 rs35307904 0.0178 body weight (EFO:0004338)
 PMID:34594039
GWAS1721434_H GCST008839 Height 159,095 Japanese ancestry individuals ? NR 4E-21 20.398 rs35307904 0.050760236 body height (OBA:VT0001253)
 PMID:31562340
GWAS1722227_H GCST007841 Height approximately 458,000 European ancestry individuals ? NR 2E-106 105.699 rs35307904 N/A body height (OBA:VT0001253)
 PMID:30595370
GWAS1365601_H GCST012227 Hip circumference adjusted for BMI 186,825 British ancestry men A NR 1E-8 8 rs35307904 0.0267728 BMI-adjusted hip circumference (EFO:0008039)
 PMID:34021172
GWAS1389620_H GCST90309355 Body size (confirmatory factor analysis Factor 21) 329,172 European ancestry individuals ? NR 8E-33 32.097 rs35307904 N/A size (EFO:0001695)
 PMID:38965376
GWAS1762624_H GCST90475359 Height (maximum, inv-normal transformed) 424,305 European ancestry individuals G 0.8704 1E-230 230 rs35307904 0.1332 body height (OBA:VT0001253)
 PMID:39024449
GWAS1415109_H GCST90245995 Body surface area 337,198 British ancestry individuals ? NR 2E-26 25.699 rs35307904 0.00659194 body surface area (EFO:0022196)
 PMID:36502284
GWAS1424327_H GCST90270118 Multi-trait sex score 141,980 European ancestry males ? NR 2E-9 8.699 rs35307904 N/A sexual dimorphism measurement (EFO:0021796)
 PMID:37277458
GWAS1434919_H GCST90270116 Multi-trait sex score 161,906 European ancestry females ? NR 4E-14 13.398 rs35307904 N/A sexual dimorphism measurement (EFO:0021796)
 PMID:37277458
GWAS1770792_H GCST90479635 height (mean, inv-normal transformed) 119,012 African American or Afro-Caribbean individuals, 57,810 Hispanic or Latin American individuals, 6,384 East Asian ancestry individuals, 424,305 European ancestry individuals G 0.8923 1E-49 49 rs35307904 0.08992 body height (OBA:VT0001253)
 PMID:39024449
GWAS1771224_H GCST90479634 Height (maximum, inv-normal transformed) 119,011 African American or Afro-Caribbean individuals, 57,810 Hispanic or Latin American individuals, 6,384 East Asian ancestry individuals, 424,305 European ancestry individuals G 0.8923 2E-49 48.699 rs35307904 0.08868 body height (OBA:VT0001253)
 PMID:39024449
GWAS1773014_H GCST90479637 What is your height? (cm, inv-normal transformed) 51,137 African American or Afro-Caribbean individuals, 27,055 Hispanic or Latin American individuals, 3,110 East Asian ancestry individuals, 283,251 European ancestry individuals G 0.8859 7E-39 38.155 rs35307904 0.08809 body height (OBA:VT0001253)
 PMID:39024449
GWAS1809174_H GCST90018959 Height 360,388 European ancestry individuals, 165,056 East Asian ancestry individuals A NR 4E-84 83.398 rs35307904 0.041 body height (OBA:VT0001253)
 PMID:34594039
GWAS1810770_H GCST90018739 Height 165,056 East Asian ancestry individuals A 0.080874 5E-18 17.302 rs35307904 0.0331149 body height (OBA:VT0001253)
 PMID:34594039
1 to 14 of 14 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90018949 GWAS Catalog

Note Type Note Reference