GWAS1377945_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1377945_H (hypothyroidism QTL GWAS1377945 (human)) Homo sapiens

Symbol: GWAS1377945_H
Name: hypothyroidism QTL GWAS1377945 (human)
RGD ID: 597281871
Trait: hypothyroidism
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38125,003,287 - 25,003,288RGD_MAPPER_PIPELINEGRCh38
GRCh37125,329,778 - 25,329,779RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1377945_HHumanhypothyroidism  IAGPrs311466405850206 GWAS_CATALOGPMID:36093044

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1377945_HHumanHypothyroidism  IAGPrs311466405850206 GWAS_CATALOGPMID:36093044
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1377945_HHumanhypothyroidism  IAGPrs311466405850206 GWAS_CATALOGPMID:36093044

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs311466)
Human AssemblyChrPosition (strand)Source
GRCh38125,003,287 - 25,003,288RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597281871GWAS1377945_Hhypothyroidism QTL GWAS1377945 (human)2e-09hypothyroidism12500328725003288Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1377945_H GCST90204167 Hypothyroidism 51,194 European ancestry cases, 443,383 European ancestry controls T NR 2E-9 8.699 rs311466 0.0563908 hypothyroidism (EFO:0004705)
 PMID:36093044
Database
Acc Id
Source(s)
GWAS Catalog GCST90204167 GWAS Catalog

Note Type Note Reference