GWAS1370200_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1370200_H (physical activity measurement QTL GWAS1370200 (human)) Homo sapiens

Symbol: GWAS1370200_H
Name: physical activity measurement QTL GWAS1370200 (human)
RGD ID: 597274126
Trait: wellness/fitness trait   (VT:1000152)    
Measurement Type: voluntary body mobility/immobility measurement   (CMO:0000954)    
LOD Score: Not Available
P Value: 9.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3811107,450,430 - 107,450,431RGD_MAPPER_PIPELINEGRCh38
GRCh3711107,321,156 - 107,321,157RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1370200_HHumanvoluntary body mobility/immobility measurement  IAGPrs568546405850206 GWAS_CATALOGPMID:36071172

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1370200_HHumanwellness/fitness trait  IAGPrs568546405850206Based on the EFO term IDGWAS_CATALOGPMID:36071172

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1370200_HHumanphysical activity measurement  IAGPrs568546405850206 GWAS_CATALOGPMID:36071172

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1320784CWF19L2CWF19 like cell cycle control factor 211107326360107457825Human


Peak: (rs568546)
Human AssemblyChrPosition (strand)Source
GRCh3811107,450,430 - 107,450,431RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597274126GWAS1370200_Hphysical activity measurement QTL GWAS1370200 (human)9e-10wellness/fitness trait (VT:1000152)voluntary body mobility/immobility measurement (CMO:0000954)11107450430107450431Human
1559115SCL20_HSerum cholesterol level QTL 20 (human)3.220.001213Lipid levelLDL cholesterol11100442501126442501Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1370200_H GCST90137459 Moderate-to-vigorous intensity physical activity during leisure time (MTAG) 608,595 European ancestry individuals T NR 9E-10 9.046 rs568546 0.022 physical activity measurement (EFO:0008002)
 PMID:36071172
Database
Acc Id
Source(s)
GWAS Catalog GCST90137459 GWAS Catalog

Note Type Note Reference