GWAS1362166_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1362166_H (BMI-adjusted waist circumference QTL GWAS1362166 (human)) Homo sapiens

Symbol: GWAS1362166_H
Name: BMI-adjusted waist circumference QTL GWAS1362166 (human)
RGD ID: 597266092
Trait: body size trait   (VT:0100005)    
LOD Score: Not Available
P Value: 5.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38123,374,318 - 23,374,319RGD_MAPPER_PIPELINEGRCh38
GRCh37123,700,811 - 23,700,812RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1362166_HHumanbody size trait  IAGPrs9887921405850206 GWAS_CATALOGPMID:34021172

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1362166_HHumanBMI-adjusted waist circumference  IAGPrs9887921405850206 GWAS_CATALOGPMID:34021172

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs9887921)
Human AssemblyChrPosition (strand)Source
GRCh38123,374,318 - 23,374,319RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597266092GWAS1362166_HBMI-adjusted waist circumference QTL GWAS1362166 (human)5e-09body size trait (VT:0100005)12337431823374319Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597241492GWAS1337566_HBMI-adjusted waist circumference QTL GWAS1337566 (human)4e-08body size trait (VT:0100005)12337431823374319Human
597291396GWAS1387470_HBMI-adjusted waist-hip ratio QTL GWAS1387470 (human)1e-09body size trait (VT:0100005)12337431823374319Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1362166_H GCST90020029 Waist circumference adjusted for body mass index 219,872 British ancestry women T NR 5E-9 8.302 rs9887921 0.0329341 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
GWAS1719464_H GCST90019506 Estimated glomerular filtration rate 342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals T NR 2E-11 10.699 rs9887921 0.0305 glomerular filtration rate (OBA:0003747)
 PMID:33462484
GWAS1719552_H GCST90019502 Creatinine levels 342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals T NR 6E-12 11.222 rs9887921 0.0314 serum creatinine amount (OBA:2050096)
 PMID:33462484
GWAS1337566_H GCST90020024 A body shape index 219,872 British ancestry women T NR 4E-8 7.398 rs9887921 0.0310918 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
GWAS1387470_H GCST90020027 Waist-hip index 219,872 British ancestry women T NR 1E-9 9 rs9887921 0.0338156 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
Database
Acc Id
Source(s)
GWAS Catalog GCST90020029 GWAS Catalog

Note Type Note Reference