GWAS1354246_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1354246_H (psoriasis QTL GWAS1354246 (human)) Homo sapiens

Symbol: GWAS1354246_H
Name: psoriasis QTL GWAS1354246 (human)
RGD ID: 597258172
Trait: psoriasis
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,993,043 - 11,993,044RGD_MAPPER_PIPELINEGRCh38
GRCh37112,053,100 - 12,053,101RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1354246_HHumanpsoriasis  IAGPrs2103876405850206 GWAS_CATALOGPMID:34927100

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1354246_HHumanPsoriasiform dermatitis  IAGPrs2103876405850206 GWAS_CATALOGPMID:34927100
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1354246_HHumanpsoriasis  IAGPrs2103876405850206 GWAS_CATALOGPMID:34927100

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732569MFN2mitofusin 211198044412013508Human


Peak: (rs2103876)
Human AssemblyChrPosition (strand)Source
GRCh38111,993,043 - 11,993,044RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597258170GWAS1354244_Hpsoriasis QTL GWAS1354244 (human)0.0000001psoriasis11199304311993044Human
597258172GWAS1354246_Hpsoriasis QTL GWAS1354246 (human)1e-09psoriasis11199304311993044Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1354246_H GCST90019017 Psoriasis 15,967 European ancestry cases, 28,194 European ancestry controls, 2,590 South Asian ancestry cases, 1,720 South Asian ancestry controls T NR 1E-9 9 rs2103876 1.11 psoriasis (EFO:0000676)
 PMID:34927100
GWAS1354244_H GCST90019016 Psoriasis 15,967 European ancestry cases, 28,194 European ancestry controls T NR 1E-7 7 rs2103876 1.1 psoriasis (EFO:0000676)
 PMID:34927100
Database
Acc Id
Source(s)
GWAS Catalog GCST90019017 GWAS Catalog

Note Type Note Reference