GWAS1349105_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1349105_H (apolipoprotein B measurement QTL GWAS1349105 (human)) Homo sapiens

Symbol: GWAS1349105_H
Name: apolipoprotein B measurement QTL GWAS1349105 (human)
RGD ID: 597253031
Trait: apolipoprotein B measurement
Measurement Type: blood apoliprotein B level   (CMO:0000522)    
LOD Score: Not Available
P Value: 3.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381557,003,381 - 57,003,382RGD_MAPPER_PIPELINEGRCh38
GRCh371557,295,579 - 57,295,580RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1349105_HHumanblood apoliprotein B level  IAGPrs72749499405850206 GWAS_CATALOGPMID:33462484

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1349105_HHumanapolipoprotein B measurement  IAGPrs72749499405850206 GWAS_CATALOGPMID:33462484

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
731955TCF12transcription factor 12155691809057291310Human


Peak: (rs72749499)
Human AssemblyChrPosition (strand)Source
GRCh381557,003,381 - 57,003,382RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597145463GWAS1241537_Htriglyceride measurement QTL GWAS1241537 (human)6e-10triglyceride measurementblood triglyceride level (CMO:0000118)155700338157003382Human
597275325GWAS1371399_Hlow density lipoprotein cholesterol measurement QTL GWAS1371399 (human)4e-19low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155700338157003382Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597253031GWAS1349105_Hapolipoprotein B measurement QTL GWAS1349105 (human)3e-11apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)155700338157003382Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1349105_H GCST90019496 Apolipoprotein B levels 340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals G NR 3E-11 10.523 rs72749499 0.0305 apolipoprotein B measurement (EFO:0004615)
 PMID:33462484
GWAS1241537_H GCST90179149 Triglyceride levels (MTAG) 361,194 European ancestry individuals A NR 6E-10 9.222 rs72749499 0.02957 triglyceride measurement (EFO:0004530)
 PMID:36376304
GWAS1371399_H GCST90239658 Low density lipoprotein cholesterol levels 1,320,016 European ancestry individuals G 0.0704225 4E-19 18.398 rs72749499 0.0287142 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34887591
Database
Acc Id
Source(s)
GWAS Catalog GCST90019496 GWAS Catalog

Note Type Note Reference