GWAS1346861_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1346861_H (schizophrenia QTL GWAS1346861 (human)) Homo sapiens

Symbol: GWAS1346861_H
Name: schizophrenia QTL GWAS1346861 (human)
RGD ID: 597250787
Trait: schizophrenia
LOD Score: Not Available
P Value: 8.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3816,665,170 - 6,665,171RGD_MAPPER_PIPELINEGRCh38
GRCh3716,725,230 - 6,725,231RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1346861_HHumanschizophrenia  IAGPrs200450405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:33169155


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1317094DNAJC11DnaJ heat shock protein family (Hsp40) member C11166341706701816Human


Peak: (rs200450)
Human AssemblyChrPosition (strand)Source
GRCh3816,665,170 - 6,665,171RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597250787GWAS1346861_Hschizophrenia QTL GWAS1346861 (human)8e-09schizophrenia166651706665171Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1346861_H GCST011769 Schizophrenia 44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls G NR 8E-9 8.097 rs200450 1.05 PMID:33169155
Database
Acc Id
Source(s)
GWAS Catalog GCST011769 GWAS Catalog

Note Type Note Reference