GWAS1341563_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1341563_H (sex hormone-binding globulin measurement QTL GWAS1341563 (human)) Homo sapiens

Symbol: GWAS1341563_H
Name: sex hormone-binding globulin measurement QTL GWAS1341563 (human)
RGD ID: 597245489
Trait: sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 4.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381550,715,532 - 50,715,533RGD_MAPPER_PIPELINEGRCh38
GRCh371551,007,729 - 51,007,730RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1341563_HHumansex hormone-binding globulin measurement  IAGPrs12595082405850206 GWAS_CATALOGPMID:33462484

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1602994SPPL2Asignal peptide peptidase like 2A155070226650765706Human


Peak: (rs12595082)
Human AssemblyChrPosition (strand)Source
GRCh381550,715,532 - 50,715,533RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597223626GWAS1319700_Hcalcium measurement QTL GWAS1319700 (human)2e-11calcium measurementblood calcium level (CMO:0000502)155071553250715533Human
597248426GWAS1344500_Hblood phosphate measurement QTL GWAS1344500 (human)5e-14blood phosphate amount (VT:0001565)blood phosphate level (CMO:0000504)155071553250715533Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597245489GWAS1341563_Hsex hormone-binding globulin measurement QTL GWAS1341563 (human)4e-09sex hormone-binding globulin measurement155071553250715533Human
597231090GWAS1327164_HAlzheimer disease, high density lipoprotein cholesterol measurement QTL GWAS1327164 (human)3e-08Alzheimer disease, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155071553250715533Human
597226852GWAS1322926_Hserum gamma-glutamyl transferase measurement QTL GWAS1322926 (human)1e-09serum gamma-glutamyl transferase measurementserum gamma-glutamyltransferase activity level (CMO:0002241)155071553250715533Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1341563_H GCST90019518 Sex hormone-binding globulin levels 310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals T NR 4E-9 8.398 rs12595082 0.0197 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:33462484
GWAS1319700_H GCST90019500 Calcium levels 313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals T NR 2E-11 10.699 rs12595082 0.0225 calcium measurement (EFO:0004838)
 PMID:33462484
GWAS1322926_H GCST90019507 Gamma glutamyl transferase levels 342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals T NR 1E-9 9 rs12595082 0.0192 serum gamma-glutamyl transferase measurement (EFO:0004532)
 PMID:33462484
GWAS1327164_H GCST90013836 Alzheimer's disease or HDL levels (pleiotropy) 404,128 European ancestry individuals with HDL-C measurements, 71,880 Alzheimer's disease cases, 383,378 controls C 0.81 3E-8 7.523 rs12595082 N/A high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:33541420
GWAS1344500_H GCST90019516 Serum phosphate levels 312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals T NR 5E-14 13.302 rs12595082 0.0251 blood phosphate measurement (EFO:0010972)
 PMID:33462484
Database
Acc Id
Source(s)
GWAS Catalog GCST90019518 GWAS Catalog

Note Type Note Reference