GWAS1340824_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1340824_H (sex hormone-binding globulin measurement QTL GWAS1340824 (human)) Homo sapiens

Symbol: GWAS1340824_H
Name: sex hormone-binding globulin measurement QTL GWAS1340824 (human)
RGD ID: 597244750
Trait: sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 3.0E-25
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381553,382,997 - 53,382,998RGD_MAPPER_PIPELINEGRCh38
GRCh371553,675,194 - 53,675,195RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1340824_HHumansex hormone-binding globulin measurement  IAGPrs113401670405850206 GWAS_CATALOGPMID:33462484

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs113401670)
Human AssemblyChrPosition (strand)Source
GRCh381553,382,997 - 53,382,998RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597254632GWAS1350706_HC-reactive protein measurement QTL GWAS1350706 (human)2e-12C-reactive protein measurementblood C-reactive protein level (CMO:0003160)155338299753382998Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597244750GWAS1340824_Hsex hormone-binding globulin measurement QTL GWAS1340824 (human)3e-25sex hormone-binding globulin measurement155338299753382998Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1340824_H GCST90019518 Sex hormone-binding globulin levels 310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals T NR 3E-25 24.523 rs113401670 0.0963 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:33462484
GWAS1350706_H GCST90019499 C-reactive protein levels 341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals T NR 2E-12 11.699 rs113401670 0.062 C-reactive protein measurement (EFO:0004458)
 PMID:33462484
Database
Acc Id
Source(s)
GWAS Catalog GCST90019518 GWAS Catalog

Note Type Note Reference