GWAS1340450_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1340450_H (high density lipoprotein cholesterol measurement QTL GWAS1340450 (human)) Homo sapiens

Symbol: GWAS1340450_H
Name: high density lipoprotein cholesterol measurement QTL GWAS1340450 (human)
RGD ID: 597244376
Trait: high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 4.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38819,636,275 - 19,636,276RGD_MAPPER_PIPELINEGRCh38
GRCh37819,493,786 - 19,493,787RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1340450_HHumanblood high density lipoprotein cholesterol level  IAGPrs2975424405850206 GWAS_CATALOGPMID:33462484

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1340450_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs2975424405850206 GWAS_CATALOGPMID:33462484

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1601858CSGALNACT1chondroitin sulfate N-acetylgalactosaminyltransferase 181940416119757908Human


Peak: (rs2975424)
Human AssemblyChrPosition (strand)Source
GRCh38819,636,275 - 19,636,276RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
597244376GWAS1340450_Hhigh density lipoprotein cholesterol measurement QTL GWAS1340450 (human)4e-12high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81963627519636276Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human
597242211GWAS1338285_Htriglyceride measurement QTL GWAS1338285 (human)4e-10triglyceride measurementblood triglyceride level (CMO:0000118)81963627519636276Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1340450_H GCST90019510 High density lipoprotein cholesterol levels 313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals C NR 4E-12 11.398 rs2975424 0.022 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:33462484
GWAS1338285_H GCST90019523 Triglyceride levels 342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals C NR 4E-10 9.398 rs2975424 0.019 triglyceride measurement (EFO:0004530)
 PMID:33462484
Database
Acc Id
Source(s)
GWAS Catalog GCST90019510 GWAS Catalog

Note Type Note Reference