GWAS1336718_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1336718_H (high density lipoprotein cholesterol measurement QTL GWAS1336718 (human)) Homo sapiens

Symbol: GWAS1336718_H
Name: high density lipoprotein cholesterol measurement QTL GWAS1336718 (human)
RGD ID: 597240644
Trait: high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 2.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38819,734,750 - 19,734,751RGD_MAPPER_PIPELINEGRCh38
GRCh37819,592,261 - 19,592,262RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1336718_HHumanblood high density lipoprotein cholesterol level  IAGPrs78248243405850206 GWAS_CATALOGPMID:33462484

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1336718_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs78248243405850206 GWAS_CATALOGPMID:33462484

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1601858CSGALNACT1chondroitin sulfate N-acetylgalactosaminyltransferase 181940416119757908Human


Peak: (rs78248243)
Human AssemblyChrPosition (strand)Source
GRCh38819,734,750 - 19,734,751RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597242217GWAS1338291_Htriglyceride measurement QTL GWAS1338291 (human)7e-10triglyceride measurementblood triglyceride level (CMO:0000118)81973475019734751Human
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
597250635GWAS1346709_Hapolipoprotein A 1 measurement QTL GWAS1346709 (human)3e-10apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)81973475019734751Human
597148320GWAS1244394_Htriglyceride measurement QTL GWAS1244394 (human)2e-08triglyceride measurementblood triglyceride level (CMO:0000118)81973475019734751Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human
597240644GWAS1336718_Hhigh density lipoprotein cholesterol measurement QTL GWAS1336718 (human)2e-15high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81973475019734751Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1336718_H GCST90019510 High density lipoprotein cholesterol levels 313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals A NR 2E-15 14.699 rs78248243 0.0583 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:33462484
GWAS1244394_H GCST90179149 Triglyceride levels (MTAG) 361,194 European ancestry individuals A NR 2E-8 7.699 rs78248243 0.04065 triglyceride measurement (EFO:0004530)
 PMID:36376304
GWAS1338291_H GCST90019523 Triglyceride levels 342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals A NR 7E-10 9.155 rs78248243 0.0433 triglyceride measurement (EFO:0004530)
 PMID:33462484
GWAS1346709_H GCST90019495 Apolipoprotein A1 levels 311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals A NR 3E-10 9.523 rs78248243 0.0462 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:33462484
Database
Acc Id
Source(s)
GWAS Catalog GCST90019510 GWAS Catalog

Note Type Note Reference