GWAS1325872_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1325872_H (chronotype measurement QTL GWAS1325872 (human)) Homo sapiens

Symbol: GWAS1325872_H
Name: chronotype measurement QTL GWAS1325872 (human)
RGD ID: 597229798
Trait: sleep behavior trait   (VT:0001501)    
LOD Score: Not Available
P Value: 3.0E-26
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3817,788,883 - 7,788,884RGD_MAPPER_PIPELINEGRCh38
GRCh3717,848,943 - 7,848,944RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1325872_HHumansleep behavior trait  IAGPrs228726405850206Based on the EFO term IDGWAS_CATALOGPMID:30696823

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1325872_HHumanchronotype measurement  IAGPrs228726405850206 GWAS_CATALOGPMID:30696823

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1352533PER3period circadian regulator 3177842917845177Human


Peak: (rs228726)
Human AssemblyChrPosition (strand)Source
GRCh3817,788,883 - 7,788,884RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597229798GWAS1325872_Hchronotype measurement QTL GWAS1325872 (human)3e-26sleep behavior trait (VT:0001501)177888837788884Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1325872_H GCST007576 Chronotype 449,734 European ancestry individuals A 0.1001 3E-26 25.523 rs228726 0.0299295 chronotype measurement (EFO:0008328)
 PMID:30696823
Database
Acc Id
Source(s)
GWAS Catalog GCST007576 GWAS Catalog

Note Type Note Reference