QTL: GWAS1324320_H (smoking initiation QTL GWAS1324320 (human)) Homo sapiens
Symbol:
GWAS1324320_H
Name:
smoking initiation QTL GWAS1324320 (human)
RGD ID:
597228246
Trait:
smoking initiation
LOD Score:
Not Available
P Value:
4.0E-18
Variance:
Not Available
Position
Human Assembly Chr Position (strand) Source JBrowse GRCh38 15 47,392,739 - 47,392,740 RGD_MAPPER_PIPELINE GRCh38 GRCh37 15 47,684,936 - 47,684,937 RGD_MAPPER_PIPELINE GRCh37
Population Stats:
Not Available
JBrowse:
View Region in Genome Browser (JBrowse)
Model
1605040 SEMA6D semaphorin 6D 15 47184089 47774228 Human
Peak: (rs34488670 )
Human Assembly Chr Position (strand) Source GRCh38 15 47,392,739 - 47,392,740 RGD_MAPPER_PIPELINE
407103491 GWAS752467_H unipolar depression QTL GWAS752467 (human) 1e-11 unipolar depression 15 47392739 47392740 Human 597339290 GWAS1435364_H educational attainment QTL GWAS1435364 (human) 7e-28 educational attainment 15 47392739 47392740 Human 1559411 SCL107_H Serum cholesterol level QTL 107 (human) 3.88 Lipid level triglyceride 15 26543552 52543552 Human 407327138 GWAS976114_H unipolar depression QTL GWAS976114 (human) 9e-10 unipolar depression 15 47392739 47392740 Human 407155982 GWAS804958_H risk-taking behaviour QTL GWAS804958 (human) 8e-12 risk-taking behaviour 15 47392739 47392740 Human 1559354 LDLPS4_H Low density lipoprotein particle size QTL 4 (human) 2.2 0.019 LDL particle size 15 34790230 60790230 Human 596971675 GWAS1091194_H major depressive disorder QTL GWAS1091194 (human) 5e-13 major depressive disorder 15 47392739 47392740 Human 597228246 GWAS1324320_H smoking initiation QTL GWAS1324320 (human) 4e-18 smoking initiation 15 47392739 47392740 Human 597139096 GWAS1235170_H major depressive disorder QTL GWAS1235170 (human) 9e-10 major depressive disorder 15 47392739 47392740 Human 1643273 BW330_H Body Weight QTL 330 (human) 1.05 0.014 Body weight body mass index 15 26866719 52866719 Human 597114054 GWAS1210128_H major depressive disorder QTL GWAS1210128 (human) 5e-13 major depressive disorder 15 47392739 47392740 Human 597186987 GWAS1283061_H major depressive disorder QTL GWAS1283061 (human) 1e-11 major depressive disorder 15 47392739 47392740 Human 596973249 GWAS1092768_H major depressive disorder QTL GWAS1092768 (human) 9e-10 major depressive disorder 15 47392739 47392740 Human 597318606 GWAS1414680_H smoking initiation QTL GWAS1414680 (human) 8e-62 smoking initiation 15 47392739 47392740 Human 2299958 PRSTS330_H Prostate tumor susceptibility QTL 330 (human) 1.02 0.0151 Prostate tumor susceptibility 15 34790230 60790230 Human 407307154 GWAS956130_H unipolar depression QTL GWAS956130 (human) 5e-13 unipolar depression 15 47392739 47392740 Human 1643523 BW284_H Body Weight QTL 284 (human) 1.95 0.0013 Body weight 15 21792889 47792889 Human 597119276 GWAS1215350_H major depressive disorder QTL GWAS1215350 (human) 1e-09 major depressive disorder 15 47392739 47392740 Human 596974089 GWAS1093608_H major depressive disorder QTL GWAS1093608 (human) 1e-11 major depressive disorder 15 47392739 47392740 Human
Data has come from the GWAS Catalog
The highlighted row represents the current QTL
GWAS1324320_H GCST007462 Age of smoking initiation (MTAG)
up to 931,815 European ancestry individuals
C
0.217
4E-18
17.398
rs34488670 0.0153569
smoking initiation (EFO:0005670)
PMID:30643251
GWAS1722106_H GCST007326 Number of sexual partners
370,711 European ancestry individuals
T
0.7887
1E-8
8
rs34488670 0.016623866
sexual activity behaviour attribute (OBA:2045293)
PMID:30643258
GWAS1210128_H GCST007342 Depression
118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls
C
0.2113
5E-13
12.302
rs34488670 1.0193679
PMID:30718901
GWAS1215350_H GCST90328131 Major depressive disorder (broad)
258,364 European ancestry cases, 571,252 European ancestry controls, 36,818 African ancestry cases, 161,679 African ancestry controls, 21,980 East Asian ancestry cases, 360,956 East Asian ancestry controls, 4,505 South Asian ancestry cases, 27,176 South Asian ancestry controls, 25,013 Hispanic or Latin American cases, 352,946 Hispanic or Latin American controls
T
0.7856
1E-9
9
rs34488670 0.0228
PMID:38177345
GWAS1235170_H GCST90239706 Depression
13,318 European ancestry cases, 12,684 European ancestry controls, 246,363 cases, 561,190 controls
?
NR
9E-10
9.046
rs34488670 3.0E-4
PMID:34924174
GWAS804958_H GCST007323 Risk-taking tendency (4-domain principal component model)
315,894 European ancestry individuals
T
0.7885
8E-12
11.097
rs34488670 0.021578157
risk-taking behaviour (EFO:0008579)
PMID:30643258
GWAS1283061_H GCST90319327 Depression
371,184 European ancestry cases, 978,703 European ancestry controls
T
0.784725
1E-11
11
rs34488670 0.0231049
PMID:37464041
GWAS1414680_H GCST90243968 Smoking initiation
2,669,029 European ancestry individuals
C
0.212
8E-62
61.097
rs34488670 0.0176
smoking initiation (EFO:0005670)
PMID:36477530
GWAS1435364_H GCST90105038 Educational attainment
3,037,499 European ancestry individuals
T
0.7882
7E-28
27.155
rs34488670 0.0140229
educational attainment (EFO:0011015)
PMID:35361970
